Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21258 | 3' | -55.2 | NC_004778.3 | + | 121779 | 0.66 | 0.893746 |
Target: 5'- cGU-GCG-CUCGGCCGAcggcguggaCCGCGCg -3' miRNA: 3'- aCGuCGCuGAGCUGGUUaag------GGCGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 25296 | 0.66 | 0.893746 |
Target: 5'- cGCAGCGcACuUCGucGCCGcgUCCCaaGUa -3' miRNA: 3'- aCGUCGC-UG-AGC--UGGUuaAGGGcgCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 33453 | 0.67 | 0.889672 |
Target: 5'- uUGaGGCGGCUauucggCGACCGAcugugcaacgaccucUUCCaCGCGCc -3' miRNA: 3'- -ACgUCGCUGA------GCUGGUU---------------AAGG-GCGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 111763 | 0.67 | 0.88691 |
Target: 5'- cGCccauuGCGuACUCGGCgCGcgUaacaCCGCGCg -3' miRNA: 3'- aCGu----CGC-UGAGCUG-GUuaAg---GGCGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 10424 | 0.67 | 0.88691 |
Target: 5'- uUGCAauGCG-C-CG-CCGG-UCCCGCGCg -3' miRNA: 3'- -ACGU--CGCuGaGCuGGUUaAGGGCGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 118960 | 0.67 | 0.879843 |
Target: 5'- -aCAGCGuCUUauugGGCgCcGUUCCCGCGCc -3' miRNA: 3'- acGUCGCuGAG----CUG-GuUAAGGGCGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 13525 | 0.67 | 0.879843 |
Target: 5'- --gAGUGGCUCGAguccuCCAAUUCcagcaaaaCCGCGUa -3' miRNA: 3'- acgUCGCUGAGCU-----GGUUAAG--------GGCGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 27885 | 0.67 | 0.877679 |
Target: 5'- cGCGGCGGCgaguguguggCGGCCAgcgaacacaucAUUCCgcugaacaugagcgUGCGCa -3' miRNA: 3'- aCGUCGCUGa---------GCUGGU-----------UAAGG--------------GCGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 6953 | 0.67 | 0.87255 |
Target: 5'- cGC-GCGACgUGACCAAacaCCCGCa- -3' miRNA: 3'- aCGuCGCUGaGCUGGUUaa-GGGCGcg -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 77540 | 0.67 | 0.87255 |
Target: 5'- --aAGCGACgCGGCCGGcgCgUGCGCa -3' miRNA: 3'- acgUCGCUGaGCUGGUUaaGgGCGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 127081 | 0.67 | 0.87255 |
Target: 5'- cGCAGCGuggccgaaguGCUCGACUug-UCCagcaugcgGCGCc -3' miRNA: 3'- aCGUCGC----------UGAGCUGGuuaAGGg-------CGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 58319 | 0.67 | 0.87255 |
Target: 5'- gGCGGCGGCggCGGCgAcgUCggguggCGCGCu -3' miRNA: 3'- aCGUCGCUGa-GCUGgUuaAGg-----GCGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 121653 | 0.67 | 0.871809 |
Target: 5'- cGCGGCGACgcuaGugCAggacauaAUUCaaGCGCu -3' miRNA: 3'- aCGUCGCUGag--CugGU-------UAAGggCGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 38218 | 0.67 | 0.865036 |
Target: 5'- cGCAGCGGCauUUGACuCAGgugUuuGCGUg -3' miRNA: 3'- aCGUCGCUG--AGCUG-GUUaa-GggCGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 32600 | 0.67 | 0.865036 |
Target: 5'- cGCAGCGGCUgCGccgcauGCUGAUgcagCCGUGCg -3' miRNA: 3'- aCGUCGCUGA-GC------UGGUUAag--GGCGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 26989 | 0.67 | 0.865036 |
Target: 5'- cGCAGCGcGCgCGuaggaGCCAugucaaaaCCCGCGCg -3' miRNA: 3'- aCGUCGC-UGaGC-----UGGUuaa-----GGGCGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 8873 | 0.67 | 0.849366 |
Target: 5'- gGCGGCGucaaaguuCUCGGCCAAaccguaaCCCG-GCg -3' miRNA: 3'- aCGUCGCu-------GAGCUGGUUaa-----GGGCgCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 69944 | 0.67 | 0.848561 |
Target: 5'- cGCGGUcgcgaGGCaCGGCCGccucucgGUUCUCGCGCc -3' miRNA: 3'- aCGUCG-----CUGaGCUGGU-------UAAGGGCGCG- -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 27676 | 0.68 | 0.841224 |
Target: 5'- cGCAaCGugUCGGCCAg--CCCGgGg -3' miRNA: 3'- aCGUcGCugAGCUGGUuaaGGGCgCg -5' |
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21258 | 3' | -55.2 | NC_004778.3 | + | 38151 | 0.68 | 0.838743 |
Target: 5'- cGCuGCGccGCUCGACaccuccacgcuaCCCGCGCc -3' miRNA: 3'- aCGuCGC--UGAGCUGguuaa-------GGGCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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