miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21259 5' -54.1 NC_004778.3 + 105480 0.65 0.936102
Target:  5'- cUCGGACGgaAGCGCGGGaauugguCGAGuCGCu- -3'
miRNA:   3'- -GGUUUGCgaUCGCGUCU-------GCUC-GCGuu -5'
21259 5' -54.1 NC_004778.3 + 36815 0.65 0.935084
Target:  5'- cCUAAACGaCU-GCGUGGACGAGguggugcugggcacCGCAAa -3'
miRNA:   3'- -GGUUUGC-GAuCGCGUCUGCUC--------------GCGUU- -5'
21259 5' -54.1 NC_004778.3 + 31875 0.66 0.933539
Target:  5'- uCCAuaaAGCGCgccGCGCAGcaaaaccgcaucguCGAGUGCGAc -3'
miRNA:   3'- -GGU---UUGCGau-CGCGUCu-------------GCUCGCGUU- -5'
21259 5' -54.1 NC_004778.3 + 30964 0.66 0.931443
Target:  5'- uCCAAAUGaCUGaCGUcaACGGGCGCAAa -3'
miRNA:   3'- -GGUUUGC-GAUcGCGucUGCUCGCGUU- -5'
21259 5' -54.1 NC_004778.3 + 43124 0.66 0.931443
Target:  5'- gCAAGCGCUucgacGGCGCc-GCG-GCGCGc -3'
miRNA:   3'- gGUUUGCGA-----UCGCGucUGCuCGCGUu -5'
21259 5' -54.1 NC_004778.3 + 10316 0.66 0.931443
Target:  5'- -gGAGCG--GGCGUuaAGGCGAGCGUGAa -3'
miRNA:   3'- ggUUUGCgaUCGCG--UCUGCUCGCGUU- -5'
21259 5' -54.1 NC_004778.3 + 80970 0.66 0.931443
Target:  5'- uUAAGCGUcaUAGCGUccaACGAGCGCu- -3'
miRNA:   3'- gGUUUGCG--AUCGCGuc-UGCUCGCGuu -5'
21259 5' -54.1 NC_004778.3 + 32624 0.66 0.931443
Target:  5'- aCGAcCGCUGGUGCaaAGGCGAcaCGCAGc -3'
miRNA:   3'- gGUUuGCGAUCGCG--UCUGCUc-GCGUU- -5'
21259 5' -54.1 NC_004778.3 + 82652 0.66 0.931443
Target:  5'- aCCAAagcggacuugGCGCuUGGCGCGGGCGccaAGcCGCc- -3'
miRNA:   3'- -GGUU----------UGCG-AUCGCGUCUGC---UC-GCGuu -5'
21259 5' -54.1 NC_004778.3 + 49613 0.66 0.926024
Target:  5'- gCGAGCGCacugcgGGCGCuaAGAacAGCGCAAa -3'
miRNA:   3'- gGUUUGCGa-----UCGCG--UCUgcUCGCGUU- -5'
21259 5' -54.1 NC_004778.3 + 85205 0.66 0.926024
Target:  5'- aCAAACacgGC-AGCGUcgaAGACGuGCGCGAu -3'
miRNA:   3'- gGUUUG---CGaUCGCG---UCUGCuCGCGUU- -5'
21259 5' -54.1 NC_004778.3 + 90556 0.66 0.920348
Target:  5'- aUAGugGC-AGCGCucgccGcCGAGCGCAGc -3'
miRNA:   3'- gGUUugCGaUCGCGu----CuGCUCGCGUU- -5'
21259 5' -54.1 NC_004778.3 + 70215 0.66 0.914417
Target:  5'- uCCAG--GUUGGCGCcGGUGGGCGCAGg -3'
miRNA:   3'- -GGUUugCGAUCGCGuCUGCUCGCGUU- -5'
21259 5' -54.1 NC_004778.3 + 70224 0.66 0.914417
Target:  5'- cCCAAGCGCcGGa-CAGcACGGGCGuCAAa -3'
miRNA:   3'- -GGUUUGCGaUCgcGUC-UGCUCGC-GUU- -5'
21259 5' -54.1 NC_004778.3 + 115197 0.66 0.908231
Target:  5'- gCAGGCGUUgggggAGCGCGGACGcguuaucacaccGGuCGCGAu -3'
miRNA:   3'- gGUUUGCGA-----UCGCGUCUGC------------UC-GCGUU- -5'
21259 5' -54.1 NC_004778.3 + 38436 0.66 0.908231
Target:  5'- ---cGCGCUGGCGCAGAUcAGCcuCGAc -3'
miRNA:   3'- gguuUGCGAUCGCGUCUGcUCGc-GUU- -5'
21259 5' -54.1 NC_004778.3 + 65745 0.66 0.908231
Target:  5'- gCAGACGgcguUUGGCGCAG-CGAGCcggGCGGu -3'
miRNA:   3'- gGUUUGC----GAUCGCGUCuGCUCG---CGUU- -5'
21259 5' -54.1 NC_004778.3 + 85392 0.66 0.908231
Target:  5'- gCAAACGCccGCGUGGGCGA-CGCc- -3'
miRNA:   3'- gGUUUGCGauCGCGUCUGCUcGCGuu -5'
21259 5' -54.1 NC_004778.3 + 71438 0.67 0.901794
Target:  5'- --cGGCGggGGCGUAGGCGAGgGUg- -3'
miRNA:   3'- gguUUGCgaUCGCGUCUGCUCgCGuu -5'
21259 5' -54.1 NC_004778.3 + 71462 0.67 0.901794
Target:  5'- --cGGCGggGGCGUAGGCGAGgGUg- -3'
miRNA:   3'- gguUUGCgaUCGCGUCUGCUCgCGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.