miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21260 3' -58.6 NC_004778.3 + 95403 0.66 0.782788
Target:  5'- -gGUCgCCGCGGcGCACC-AUG-CCCGa -3'
miRNA:   3'- aaUAGaGGUGCC-CGUGGgUGCuGGGC- -5'
21260 3' -58.6 NC_004778.3 + 91175 0.66 0.773531
Target:  5'- ---cCUCCGuCGGGCGCUCGCGuuCaCGc -3'
miRNA:   3'- aauaGAGGU-GCCCGUGGGUGCugG-GC- -5'
21260 3' -58.6 NC_004778.3 + 123644 0.66 0.745047
Target:  5'- -cGUCcaagcagCUugGGGCAaCCAUGGCCCu -3'
miRNA:   3'- aaUAGa------GGugCCCGUgGGUGCUGGGc -5'
21260 3' -58.6 NC_004778.3 + 2389 0.66 0.745047
Target:  5'- ---cUUCCGCGcGGUggccgacguGCCCGCG-CCCGa -3'
miRNA:   3'- aauaGAGGUGC-CCG---------UGGGUGCuGGGC- -5'
21260 3' -58.6 NC_004778.3 + 49334 0.67 0.725552
Target:  5'- --uUCUgccCCACGGcCAUCCACGAgCCCa -3'
miRNA:   3'- aauAGA---GGUGCCcGUGGGUGCU-GGGc -5'
21260 3' -58.6 NC_004778.3 + 121722 0.67 0.695733
Target:  5'- cUAUCUgCA-GGGCGCCaaaACGGCCgGc -3'
miRNA:   3'- aAUAGAgGUgCCCGUGGg--UGCUGGgC- -5'
21260 3' -58.6 NC_004778.3 + 36142 0.68 0.61452
Target:  5'- uUUGUgUCgACGGGCAacggucugcaCCACGACUCa -3'
miRNA:   3'- -AAUAgAGgUGCCCGUg---------GGUGCUGGGc -5'
21260 3' -58.6 NC_004778.3 + 121911 0.69 0.604346
Target:  5'- ---gUUCCA-GGGCAUCaGCGACCCGc -3'
miRNA:   3'- aauaGAGGUgCCCGUGGgUGCUGGGC- -5'
21260 3' -58.6 NC_004778.3 + 21244 0.69 0.604346
Target:  5'- ---gCUCCGCGGGCuGCaCCGCGcugacGCCUGu -3'
miRNA:   3'- aauaGAGGUGCCCG-UG-GGUGC-----UGGGC- -5'
21260 3' -58.6 NC_004778.3 + 114067 0.69 0.56392
Target:  5'- --cUCUCCGCGaGCgaggaACCCGCGGCgCCGc -3'
miRNA:   3'- aauAGAGGUGCcCG-----UGGGUGCUG-GGC- -5'
21260 3' -58.6 NC_004778.3 + 10744 0.7 0.543964
Target:  5'- ---gCUCCGCGGGCugCCGUGugCgCGc -3'
miRNA:   3'- aauaGAGGUGCCCGugGGUGCugG-GC- -5'
21260 3' -58.6 NC_004778.3 + 108152 1.06 0.002265
Target:  5'- uUUAUCUCCACGGGCACCCACGACCCGu -3'
miRNA:   3'- -AAUAGAGGUGCCCGUGGGUGCUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.