miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21260 5' -56.2 NC_004778.3 + 38307 0.66 0.876239
Target:  5'- uAGCGugg-AGGUGUCGagcGGCGcagcGGGCCu -3'
miRNA:   3'- -UCGUuuuaUCCGCAGC---CCGC----UCCGGc -5'
21260 5' -56.2 NC_004778.3 + 115216 0.66 0.876239
Target:  5'- cAGCAGcccucaucgacgGGcAGGCGUUGGGgGAGcGCgGa -3'
miRNA:   3'- -UCGUU------------UUaUCCGCAGCCCgCUC-CGgC- -5'
21260 5' -56.2 NC_004778.3 + 51410 0.66 0.868851
Target:  5'- cGCAGGAUuuuGCG-CGGGCaugucGAGGCUGc -3'
miRNA:   3'- uCGUUUUAuc-CGCaGCCCG-----CUCCGGC- -5'
21260 5' -56.2 NC_004778.3 + 17602 0.66 0.868851
Target:  5'- cGCGAGAUuucGCaGUUGaaacGGCGGGGCCGc -3'
miRNA:   3'- uCGUUUUAuc-CG-CAGC----CCGCUCCGGC- -5'
21260 5' -56.2 NC_004778.3 + 89357 0.66 0.853428
Target:  5'- cGGCAAuagccAGGCGcccaaaaagaCGGGCGcGGCCa -3'
miRNA:   3'- -UCGUUuua--UCCGCa---------GCCCGCuCCGGc -5'
21260 5' -56.2 NC_004778.3 + 71258 0.66 0.853428
Target:  5'- cGGCGA---AGGCGUU-GGCGAGGgUGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 82656 0.66 0.845405
Target:  5'- aAGCGGAcuuGGCGcUUGGcGCGGGcGCCa -3'
miRNA:   3'- -UCGUUUuauCCGC-AGCC-CGCUC-CGGc -5'
21260 5' -56.2 NC_004778.3 + 71282 0.67 0.837184
Target:  5'- cGGCGA---GGGUGUC-GGCGAGGgUGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 71234 0.67 0.837184
Target:  5'- aGGCGA---GGGUGUC-GGCGAGGgUGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 94734 0.67 0.820178
Target:  5'- cAGCAc---GGGCGUCuGGCugcuGGCCGa -3'
miRNA:   3'- -UCGUuuuaUCCGCAGcCCGcu--CCGGC- -5'
21260 5' -56.2 NC_004778.3 + 121243 0.67 0.820178
Target:  5'- cGGCGAGuc-GGgGUCuGcGGCGGGGUCGc -3'
miRNA:   3'- -UCGUUUuauCCgCAG-C-CCGCUCCGGC- -5'
21260 5' -56.2 NC_004778.3 + 53159 0.67 0.811409
Target:  5'- cGGCGGuugcuGUGgcGGCgGUUGcGGCGGGGCCu -3'
miRNA:   3'- -UCGUUu----UAU--CCG-CAGC-CCGCUCCGGc -5'
21260 5' -56.2 NC_004778.3 + 71306 0.68 0.765242
Target:  5'- cGGCGA---GGGUGUC-GGCGGGGgCGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 71378 0.68 0.765242
Target:  5'- aGGCGA---GGGUGUC-GGCGGGGgCGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 71402 0.68 0.765242
Target:  5'- aGGCGA---GGGUGUC-GGCGGGGgCGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 71426 0.68 0.765242
Target:  5'- aGGCGA---GGGUGUC-GGCGGGGgCGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 71450 0.68 0.765242
Target:  5'- aGGCGA---GGGUGUC-GGCGGGGgCGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 71474 0.68 0.765242
Target:  5'- aGGCGA---GGGUGUC-GGCGGGGgCGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 47135 0.68 0.765242
Target:  5'- cGCAca--AGcGCGUCGGcGUGAGcGCCGg -3'
miRNA:   3'- uCGUuuuaUC-CGCAGCC-CGCUC-CGGC- -5'
21260 5' -56.2 NC_004778.3 + 3987 0.69 0.726076
Target:  5'- cGCAAAAUc-GCGUUGGGaaGGGCCa -3'
miRNA:   3'- uCGUUUUAucCGCAGCCCgcUCCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.