Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
21260 | 5' | -56.2 | NC_004778.3 | + | 116235 | 0.7 | 0.665029 |
Target: 5'- aGGCGAAAUGGGUGcCGGuuauugucuaGCcuaGGGGCCGc -3' miRNA: 3'- -UCGUUUUAUCCGCaGCC----------CG---CUCCGGC- -5' |
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21260 | 5' | -56.2 | NC_004778.3 | + | 62873 | 0.71 | 0.613315 |
Target: 5'- uGcCAAGAcGGGCGacgUGGGCGAGGCa- -3' miRNA: 3'- uC-GUUUUaUCCGCa--GCCCGCUCCGgc -5' |
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21260 | 5' | -56.2 | NC_004778.3 | + | 2566 | 0.71 | 0.602983 |
Target: 5'- cGCAauaAAGUGGuCGUCGGGCGcGGGCaCGu -3' miRNA: 3'- uCGU---UUUAUCcGCAGCCCGC-UCCG-GC- -5' |
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21260 | 5' | -56.2 | NC_004778.3 | + | 113872 | 0.72 | 0.566024 |
Target: 5'- aAGCAAAuucaaaauggccgGGcGCGUCGGGCGaAGGCgGc -3' miRNA: 3'- -UCGUUUua-----------UC-CGCAGCCCGC-UCCGgC- -5' |
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21260 | 5' | -56.2 | NC_004778.3 | + | 21105 | 0.73 | 0.49228 |
Target: 5'- uAGCAAGGUuacGGGCaacUCGGGCGGccGGCUGg -3' miRNA: 3'- -UCGUUUUA---UCCGc--AGCCCGCU--CCGGC- -5' |
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21260 | 5' | -56.2 | NC_004778.3 | + | 114350 | 0.73 | 0.480722 |
Target: 5'- gAGCGGuuugacccuGcGCGccgCGGGCGAGGCCGg -3' miRNA: 3'- -UCGUUuuau-----C-CGCa--GCCCGCUCCGGC- -5' |
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21260 | 5' | -56.2 | NC_004778.3 | + | 76241 | 0.79 | 0.223625 |
Target: 5'- uGCAAAGUgccgccaaAGGUGUUGGGgGAGGCCu -3' miRNA: 3'- uCGUUUUA--------UCCGCAGCCCgCUCCGGc -5' |
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21260 | 5' | -56.2 | NC_004778.3 | + | 108118 | 1.09 | 0.002236 |
Target: 5'- uAGCAAAAUAGGCGUCGGGCGAGGCCGa -3' miRNA: 3'- -UCGUUUUAUCCGCAGCCCGCUCCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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