miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21260 5' -56.2 NC_004778.3 + 108118 1.09 0.002236
Target:  5'- uAGCAAAAUAGGCGUCGGGCGAGGCCGa -3'
miRNA:   3'- -UCGUUUUAUCCGCAGCCCGCUCCGGC- -5'
21260 5' -56.2 NC_004778.3 + 76241 0.79 0.223625
Target:  5'- uGCAAAGUgccgccaaAGGUGUUGGGgGAGGCCu -3'
miRNA:   3'- uCGUUUUA--------UCCGCAGCCCgCUCCGGc -5'
21260 5' -56.2 NC_004778.3 + 114350 0.73 0.480722
Target:  5'- gAGCGGuuugacccuGcGCGccgCGGGCGAGGCCGg -3'
miRNA:   3'- -UCGUUuuau-----C-CGCa--GCCCGCUCCGGC- -5'
21260 5' -56.2 NC_004778.3 + 21105 0.73 0.49228
Target:  5'- uAGCAAGGUuacGGGCaacUCGGGCGGccGGCUGg -3'
miRNA:   3'- -UCGUUUUA---UCCGc--AGCCCGCU--CCGGC- -5'
21260 5' -56.2 NC_004778.3 + 113872 0.72 0.566024
Target:  5'- aAGCAAAuucaaaauggccgGGcGCGUCGGGCGaAGGCgGc -3'
miRNA:   3'- -UCGUUUua-----------UC-CGCAGCCCGC-UCCGgC- -5'
21260 5' -56.2 NC_004778.3 + 62873 0.71 0.613315
Target:  5'- uGcCAAGAcGGGCGacgUGGGCGAGGCa- -3'
miRNA:   3'- uC-GUUUUaUCCGCa--GCCCGCUCCGgc -5'
21260 5' -56.2 NC_004778.3 + 2566 0.71 0.602983
Target:  5'- cGCAauaAAGUGGuCGUCGGGCGcGGGCaCGu -3'
miRNA:   3'- uCGU---UUUAUCcGCAGCCCGC-UCCG-GC- -5'
21260 5' -56.2 NC_004778.3 + 116235 0.7 0.665029
Target:  5'- aGGCGAAAUGGGUGcCGGuuauugucuaGCcuaGGGGCCGc -3'
miRNA:   3'- -UCGUUUUAUCCGCaGCC----------CG---CUCCGGC- -5'
21260 5' -56.2 NC_004778.3 + 3987 0.69 0.726076
Target:  5'- cGCAAAAUc-GCGUUGGGaaGGGCCa -3'
miRNA:   3'- uCGUUUUAucCGCAGCCCgcUCCGGc -5'
21260 5' -56.2 NC_004778.3 + 71450 0.68 0.765242
Target:  5'- aGGCGA---GGGUGUC-GGCGGGGgCGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 71426 0.68 0.765242
Target:  5'- aGGCGA---GGGUGUC-GGCGGGGgCGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 71402 0.68 0.765242
Target:  5'- aGGCGA---GGGUGUC-GGCGGGGgCGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 71378 0.68 0.765242
Target:  5'- aGGCGA---GGGUGUC-GGCGGGGgCGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 71306 0.68 0.765242
Target:  5'- cGGCGA---GGGUGUC-GGCGGGGgCGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 47135 0.68 0.765242
Target:  5'- cGCAca--AGcGCGUCGGcGUGAGcGCCGg -3'
miRNA:   3'- uCGUuuuaUC-CGCAGCC-CGCUC-CGGC- -5'
21260 5' -56.2 NC_004778.3 + 71474 0.68 0.765242
Target:  5'- aGGCGA---GGGUGUC-GGCGGGGgCGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 71282 0.67 0.837184
Target:  5'- cGGCGA---GGGUGUC-GGCGAGGgUGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 71234 0.67 0.837184
Target:  5'- aGGCGA---GGGUGUC-GGCGAGGgUGu -3'
miRNA:   3'- -UCGUUuuaUCCGCAGcCCGCUCCgGC- -5'
21260 5' -56.2 NC_004778.3 + 121243 0.67 0.820178
Target:  5'- cGGCGAGuc-GGgGUCuGcGGCGGGGUCGc -3'
miRNA:   3'- -UCGUUUuauCCgCAG-C-CCGCUCCGGC- -5'
21260 5' -56.2 NC_004778.3 + 94734 0.67 0.820178
Target:  5'- cAGCAc---GGGCGUCuGGCugcuGGCCGa -3'
miRNA:   3'- -UCGUuuuaUCCGCAGcCCGcu--CCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.