miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21261 5' -56.8 NC_004778.3 + 85523 0.66 0.831562
Target:  5'- uGCGGCGGCgaugucauggacgcGGGCguuUGCGGCg-GCGa -3'
miRNA:   3'- -UGUUGCCG--------------CCCGacuACGUCGaaCGC- -5'
21261 5' -56.8 NC_004778.3 + 27498 0.66 0.831562
Target:  5'- uGCAauGCGGCGuGUUGAUGUAugacuugucaagguGCUUGUGu -3'
miRNA:   3'- -UGU--UGCCGCcCGACUACGU--------------CGAACGC- -5'
21261 5' -56.8 NC_004778.3 + 128780 0.66 0.807977
Target:  5'- aGCAACGGC-GGCgGAgGCGGag-GCGg -3'
miRNA:   3'- -UGUUGCCGcCCGaCUaCGUCgaaCGC- -5'
21261 5' -56.8 NC_004778.3 + 128699 0.66 0.807977
Target:  5'- aGCAACGGC-GGCgGAgGCGGag-GCGg -3'
miRNA:   3'- -UGUUGCCGcCCGaCUaCGUCgaaCGC- -5'
21261 5' -56.8 NC_004778.3 + 88762 0.66 0.807977
Target:  5'- --uGCGGCaGGUUGAuuacguagcgUGCaggaAGCUUGCGg -3'
miRNA:   3'- uguUGCCGcCCGACU----------ACG----UCGAACGC- -5'
21261 5' -56.8 NC_004778.3 + 12149 0.66 0.798927
Target:  5'- aGCGGCGGCGcGGCa---GCGGCcUGCc -3'
miRNA:   3'- -UGUUGCCGC-CCGacuaCGUCGaACGc -5'
21261 5' -56.8 NC_004778.3 + 114395 0.67 0.789721
Target:  5'- aGCAACGGCcGGCuUGucaGCAGCc-GCGg -3'
miRNA:   3'- -UGUUGCCGcCCG-ACua-CGUCGaaCGC- -5'
21261 5' -56.8 NC_004778.3 + 21083 0.67 0.780369
Target:  5'- gGCGGcCGGCuGGGCUGcgGCAuuaucGCaaugUGCGc -3'
miRNA:   3'- -UGUU-GCCG-CCCGACuaCGU-----CGa---ACGC- -5'
21261 5' -56.8 NC_004778.3 + 45759 0.67 0.76126
Target:  5'- gACGAgGGCGcGGCU-AUGCAGaagGCGc -3'
miRNA:   3'- -UGUUgCCGC-CCGAcUACGUCgaaCGC- -5'
21261 5' -56.8 NC_004778.3 + 53283 0.67 0.751524
Target:  5'- cCGGCGGCGGuuGCUGuggcgGCGGUUgcugugGCGg -3'
miRNA:   3'- uGUUGCCGCC--CGACua---CGUCGAa-----CGC- -5'
21261 5' -56.8 NC_004778.3 + 25840 0.67 0.751524
Target:  5'- cGCGACGGC-GGCgGAuUGUAGCgUGCc -3'
miRNA:   3'- -UGUUGCCGcCCGaCU-ACGUCGaACGc -5'
21261 5' -56.8 NC_004778.3 + 33399 0.68 0.7217
Target:  5'- -aAACGGCGGcaGUUGAaagUGCAGUgcUGCGg -3'
miRNA:   3'- ugUUGCCGCC--CGACU---ACGUCGa-ACGC- -5'
21261 5' -56.8 NC_004778.3 + 85457 0.68 0.711586
Target:  5'- gGCGACGGCauggacgcGGGCguuUGCGGCg-GCGa -3'
miRNA:   3'- -UGUUGCCG--------CCCGacuACGUCGaaCGC- -5'
21261 5' -56.8 NC_004778.3 + 53162 0.68 0.691159
Target:  5'- -uGGCGGCGGuuGCUGugGCGGCggUUGCGg -3'
miRNA:   3'- ugUUGCCGCC--CGACuaCGUCG--AACGC- -5'
21261 5' -56.8 NC_004778.3 + 34398 0.69 0.670529
Target:  5'- uGCAGCucguGGcCGGGCUGcuccgGCAGCgcgGCGu -3'
miRNA:   3'- -UGUUG----CC-GCCCGACua---CGUCGaa-CGC- -5'
21261 5' -56.8 NC_004778.3 + 9011 0.7 0.618541
Target:  5'- -gGGCGGCGGGCUGcauuUGUcGCagGCGc -3'
miRNA:   3'- ugUUGCCGCCCGACu---ACGuCGaaCGC- -5'
21261 5' -56.8 NC_004778.3 + 124079 0.7 0.577087
Target:  5'- uGC-ACGGCGcGCUGAUGCGcGCgguugGCGg -3'
miRNA:   3'- -UGuUGCCGCcCGACUACGU-CGaa---CGC- -5'
21261 5' -56.8 NC_004778.3 + 26652 0.7 0.566806
Target:  5'- -uGACGGauuGGGCUGcAUGCAGUUuaUGCa -3'
miRNA:   3'- ugUUGCCg--CCCGAC-UACGUCGA--ACGc -5'
21261 5' -56.8 NC_004778.3 + 103146 0.7 0.566806
Target:  5'- uGCGGCGGCGGGUgGGUGCAug--GCa -3'
miRNA:   3'- -UGUUGCCGCCCGaCUACGUcgaaCGc -5'
21261 5' -56.8 NC_004778.3 + 53207 0.71 0.536277
Target:  5'- -nGGCGGCGGuuGCUGcgGCGGCggUUGCu -3'
miRNA:   3'- ugUUGCCGCC--CGACuaCGUCG--AACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.