miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21262 3' -51.2 NC_004778.3 + 93064 0.66 0.984915
Target:  5'- -aGGCCUUACcuAUGCGAcGCCGgcucgcUGCg -3'
miRNA:   3'- agCUGGAAUGcuUGCGCU-CGGCa-----AUG- -5'
21262 3' -51.2 NC_004778.3 + 102183 0.8 0.435899
Target:  5'- gCGACUUUGUGGACGCGGGCUGUgACg -3'
miRNA:   3'- aGCUGGAAUGCUUGCGCUCGGCAaUG- -5'
21262 3' -51.2 NC_004778.3 + 105819 0.66 0.986659
Target:  5'- --cACCaUGCGGACGUGGgacGUCGUUGCc -3'
miRNA:   3'- agcUGGaAUGCUUGCGCU---CGGCAAUG- -5'
21262 3' -51.2 NC_004778.3 + 107918 0.68 0.964185
Target:  5'- aCGccGCCcgACGAGCGCGAcGCgGUgcUGCg -3'
miRNA:   3'- aGC--UGGaaUGCUUGCGCU-CGgCA--AUG- -5'
21262 3' -51.2 NC_004778.3 + 111833 0.67 0.980915
Target:  5'- cUCGGCCUgcuagcCGAcaACgGCGGGCUGaUGCa -3'
miRNA:   3'- -AGCUGGAau----GCU--UG-CGCUCGGCaAUG- -5'
21262 3' -51.2 NC_004778.3 + 112047 0.67 0.97617
Target:  5'- -gGGCCgcacguUGAACGCGGGCaCGUcgucUACg -3'
miRNA:   3'- agCUGGaau---GCUUGCGCUCG-GCA----AUG- -5'
21262 3' -51.2 NC_004778.3 + 112491 0.71 0.884619
Target:  5'- gCGGCCg-AUGAACuCGAGCCGgUGCa -3'
miRNA:   3'- aGCUGGaaUGCUUGcGCUCGGCaAUG- -5'
21262 3' -51.2 NC_004778.3 + 112681 1.12 0.005172
Target:  5'- gUCGACCUUACGAACGCGAGCCGUUACg -3'
miRNA:   3'- -AGCUGGAAUGCUUGCGCUCGGCAAUG- -5'
21262 3' -51.2 NC_004778.3 + 117107 0.68 0.956832
Target:  5'- -aGugUUUGCGGcgACGCuGGGCCGUcgACa -3'
miRNA:   3'- agCugGAAUGCU--UGCG-CUCGGCAa-UG- -5'
21262 3' -51.2 NC_004778.3 + 124656 0.71 0.865124
Target:  5'- aUCGGCCUacgugacucgacgcACGGGCGCGGGCC-UUAUc -3'
miRNA:   3'- -AGCUGGAa-------------UGCUUGCGCUCGGcAAUG- -5'
21262 3' -51.2 NC_004778.3 + 125518 0.66 0.984915
Target:  5'- aCGACa--ACGAGCGCcaGGCCGUUc- -3'
miRNA:   3'- aGCUGgaaUGCUUGCGc-UCGGCAAug -5'
21262 3' -51.2 NC_004778.3 + 125667 0.66 0.990971
Target:  5'- aCGGCCUgGCGcuCGUu-GUCGUUACg -3'
miRNA:   3'- aGCUGGAaUGCuuGCGcuCGGCAAUG- -5'
21262 3' -51.2 NC_004778.3 + 127245 0.68 0.952795
Target:  5'- aCGGCCUgUGCaAACGCGAgcacucGCCGggcgUGCa -3'
miRNA:   3'- aGCUGGA-AUGcUUGCGCU------CGGCa---AUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.