miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21262 3' -51.2 NC_004778.3 + 93064 0.66 0.984915
Target:  5'- -aGGCCUUACcuAUGCGAcGCCGgcucgcUGCg -3'
miRNA:   3'- agCUGGAAUGcuUGCGCU-CGGCa-----AUG- -5'
21262 3' -51.2 NC_004778.3 + 21655 0.66 0.988243
Target:  5'- uUCGGCCg-GCGGugGCGGcGCCa---- -3'
miRNA:   3'- -AGCUGGaaUGCUugCGCU-CGGcaaug -5'
21262 3' -51.2 NC_004778.3 + 36509 0.66 0.988243
Target:  5'- aUGACg-UugGAGugcaGCGuGCCGUUGCg -3'
miRNA:   3'- aGCUGgaAugCUUg---CGCuCGGCAAUG- -5'
21262 3' -51.2 NC_004778.3 + 83442 0.66 0.989677
Target:  5'- uUCGAUaa-GCGAuaGCGCGgAGCCGccGCg -3'
miRNA:   3'- -AGCUGgaaUGCU--UGCGC-UCGGCaaUG- -5'
21262 3' -51.2 NC_004778.3 + 125667 0.66 0.990971
Target:  5'- aCGGCCUgGCGcuCGUu-GUCGUUACg -3'
miRNA:   3'- aGCUGGAaUGCuuGCGcuCGGCAAUG- -5'
21262 3' -51.2 NC_004778.3 + 64610 0.66 0.990971
Target:  5'- cCGGCCUcggcguCGAACGUGuaguuGUCGggGCa -3'
miRNA:   3'- aGCUGGAau----GCUUGCGCu----CGGCaaUG- -5'
21262 3' -51.2 NC_004778.3 + 112681 1.12 0.005172
Target:  5'- gUCGACCUUACGAACGCGAGCCGUUACg -3'
miRNA:   3'- -AGCUGGAAUGCUUGCGCUCGGCAAUG- -5'
21262 3' -51.2 NC_004778.3 + 66154 0.75 0.692103
Target:  5'- gUCGACCUUgACGGACGCucGCaacuGUUGCa -3'
miRNA:   3'- -AGCUGGAA-UGCUUGCGcuCGg---CAAUG- -5'
21262 3' -51.2 NC_004778.3 + 64304 0.7 0.911413
Target:  5'- gCGGCC--ACGGGCGCGAcgcgcugaguGaCCGUUGCu -3'
miRNA:   3'- aGCUGGaaUGCUUGCGCU----------C-GGCAAUG- -5'
21262 3' -51.2 NC_004778.3 + 127245 0.68 0.952795
Target:  5'- aCGGCCUgUGCaAACGCGAgcacucGCCGggcgUGCa -3'
miRNA:   3'- aGCUGGA-AUGcUUGCGCU------CGGCa---AUG- -5'
21262 3' -51.2 NC_004778.3 + 107918 0.68 0.964185
Target:  5'- aCGccGCCcgACGAGCGCGAcGCgGUgcUGCg -3'
miRNA:   3'- aGC--UGGaaUGCUUGCGCU-CGgCA--AUG- -5'
21262 3' -51.2 NC_004778.3 + 111833 0.67 0.980915
Target:  5'- cUCGGCCUgcuagcCGAcaACgGCGGGCUGaUGCa -3'
miRNA:   3'- -AGCUGGAau----GCU--UG-CGCUCGGCaAUG- -5'
21262 3' -51.2 NC_004778.3 + 124656 0.71 0.865124
Target:  5'- aUCGGCCUacgugacucgacgcACGGGCGCGGGCC-UUAUc -3'
miRNA:   3'- -AGCUGGAa-------------UGCUUGCGCUCGGcAAUG- -5'
21262 3' -51.2 NC_004778.3 + 62239 0.68 0.967512
Target:  5'- aCGugCUcaACGAaaaaaaccgcGCGCGAGUCGUgggGCu -3'
miRNA:   3'- aGCugGAa-UGCU----------UGCGCUCGGCAa--UG- -5'
21262 3' -51.2 NC_004778.3 + 117107 0.68 0.956832
Target:  5'- -aGugUUUGCGGcgACGCuGGGCCGUcgACa -3'
miRNA:   3'- agCugGAAUGCU--UGCG-CUCGGCAa-UG- -5'
21262 3' -51.2 NC_004778.3 + 76454 0.75 0.692103
Target:  5'- aCGGCgCUUGCcaAAUGCGAGCCGUUcACg -3'
miRNA:   3'- aGCUG-GAAUGc-UUGCGCUCGGCAA-UG- -5'
21262 3' -51.2 NC_004778.3 + 73377 0.68 0.967512
Target:  5'- cCGAUaaaUACGGaauuggcgccaACGCGAGCCGUacccUGCu -3'
miRNA:   3'- aGCUGga-AUGCU-----------UGCGCUCGGCA----AUG- -5'
21262 3' -51.2 NC_004778.3 + 26739 0.66 0.988243
Target:  5'- uUCGACgCUuggUGCGAACGaCGAcaacuaugcgGCCG-UGCg -3'
miRNA:   3'- -AGCUG-GA---AUGCUUGC-GCU----------CGGCaAUG- -5'
21262 3' -51.2 NC_004778.3 + 61352 0.66 0.990971
Target:  5'- uUCGGCUUcaugUGCGGACG-GcGCCGgcGCg -3'
miRNA:   3'- -AGCUGGA----AUGCUUGCgCuCGGCaaUG- -5'
21262 3' -51.2 NC_004778.3 + 50139 0.66 0.989677
Target:  5'- gUCGAgUaacacgUACgGAAUGCGAucGCCGUUGCc -3'
miRNA:   3'- -AGCUgGa-----AUG-CUUGCGCU--CGGCAAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.