miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21263 3' -52.9 NC_004778.3 + 85570 0.66 0.971078
Target:  5'- aCGUCauacgcGUGGGCGaCGuguACGGCGUCGc -3'
miRNA:   3'- -GCAGcaa---UACCUGC-GUu--UGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 92861 0.66 0.971078
Target:  5'- gCGUCGacAUGGACaCGc-CGGUGCCGu -3'
miRNA:   3'- -GCAGCaaUACCUGcGUuuGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 90450 0.66 0.968043
Target:  5'- uGUCGgccUGGcuUGCu-ACGGCGCCGc -3'
miRNA:   3'- gCAGCaauACCu-GCGuuUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 15605 0.66 0.964788
Target:  5'- -uUUGgcGUGGucGCGCGgaGGCGGCGCUg -3'
miRNA:   3'- gcAGCaaUACC--UGCGU--UUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 14583 0.66 0.964788
Target:  5'- --aCGgccUGGACGCcaacACGGCGUCAc -3'
miRNA:   3'- gcaGCaauACCUGCGuu--UGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 85482 0.66 0.957597
Target:  5'- uGUC---AUGGACGCGGgcguuuGCGGCGgCGa -3'
miRNA:   3'- gCAGcaaUACCUGCGUU------UGCCGCgGU- -5'
21263 3' -52.9 NC_004778.3 + 121701 0.66 0.957597
Target:  5'- gGcCGgcGUGGGCGUGuugcuggccGGCGGCGCUu -3'
miRNA:   3'- gCaGCaaUACCUGCGU---------UUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 98923 0.67 0.953649
Target:  5'- gCGUCGcuggggAUGGugGCGGcuugcACGcGCGCUg -3'
miRNA:   3'- -GCAGCaa----UACCugCGUU-----UGC-CGCGGu -5'
21263 3' -52.9 NC_004778.3 + 71435 0.67 0.949461
Target:  5'- uGUCGgcggGGGCGUAGGCgagGGUGUCGg -3'
miRNA:   3'- gCAGCaauaCCUGCGUUUG---CCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 71315 0.67 0.949461
Target:  5'- uGUCGgcggGGGCGUAGGCgagGGUGUCGg -3'
miRNA:   3'- gCAGCaauaCCUGCGUUUG---CCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 71387 0.67 0.949461
Target:  5'- uGUCGgcggGGGCGUAGGCgagGGUGUCGg -3'
miRNA:   3'- gCAGCaauaCCUGCGUUUG---CCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 85516 0.67 0.945028
Target:  5'- gCGaUGUcAUGGACGCGGgcguuuGCGGCGgCGa -3'
miRNA:   3'- -GCaGCAaUACCUGCGUU------UGCCGCgGU- -5'
21263 3' -52.9 NC_004778.3 + 65460 0.67 0.945028
Target:  5'- gGUCGUugcccgauucUGUGcaaacguuGGCGCGGugGGCGuCCAu -3'
miRNA:   3'- gCAGCA----------AUAC--------CUGCGUUugCCGC-GGU- -5'
21263 3' -52.9 NC_004778.3 + 30041 0.67 0.940348
Target:  5'- uCGUCaGUaGUGaACGCAAACG-CGCCGu -3'
miRNA:   3'- -GCAG-CAaUACcUGCGUUUGCcGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 1660 0.67 0.940348
Target:  5'- gCGUCGUUGgcaccuucgguuUGGgugcggccagcaGCGCGAGCaGGCGCa- -3'
miRNA:   3'- -GCAGCAAU------------ACC------------UGCGUUUG-CCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 96871 0.68 0.93234
Target:  5'- uGUCGUacguaaacgugacgcUAUGcGCGU--ACGGCGCCGu -3'
miRNA:   3'- gCAGCA---------------AUACcUGCGuuUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 20478 0.68 0.930237
Target:  5'- cCGUgCGUUGUGc-CGCcGAUGGUGCCGu -3'
miRNA:   3'- -GCA-GCAAUACcuGCGuUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 113893 0.68 0.924804
Target:  5'- gCG-CGUc--GGGCGaAGGCGGCGCCGc -3'
miRNA:   3'- -GCaGCAauaCCUGCgUUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 21655 0.68 0.924804
Target:  5'- -uUCGgcc--GGCGguGGCGGCGCCAu -3'
miRNA:   3'- gcAGCaauacCUGCguUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 62793 0.68 0.919119
Target:  5'- gGUCGUgccgGUGGACaCAAAUGGguggGCCGa -3'
miRNA:   3'- gCAGCAa---UACCUGcGUUUGCCg---CGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.