miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21263 3' -52.9 NC_004778.3 + 113159 1.09 0.00495
Target:  5'- uCGUCGUUAUGGACGCAAACGGCGCCAg -3'
miRNA:   3'- -GCAGCAAUACCUGCGUUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 6837 0.78 0.406962
Target:  5'- aCGggCGcccccugUGUGGACGCAGGCGGCGCg- -3'
miRNA:   3'- -GCa-GCa------AUACCUGCGUUUGCCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 30317 0.74 0.614036
Target:  5'- gCGUCGUcuucggaGUGGGCGCGuuUGGCgGCCAu -3'
miRNA:   3'- -GCAGCAa------UACCUGCGUuuGCCG-CGGU- -5'
21263 3' -52.9 NC_004778.3 + 62024 0.74 0.635049
Target:  5'- uGUCugc--GGACGCcgaGAGCGGCGCCAa -3'
miRNA:   3'- gCAGcaauaCCUGCG---UUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 19122 0.74 0.645556
Target:  5'- ---gGUUcgGGcGCGCGAGCGGCGCUg -3'
miRNA:   3'- gcagCAAuaCC-UGCGUUUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 89888 0.72 0.728432
Target:  5'- aG-CGUgGUGGGCGCAAGCGGCuuGCg- -3'
miRNA:   3'- gCaGCAaUACCUGCGUUUGCCG--CGgu -5'
21263 3' -52.9 NC_004778.3 + 97289 0.72 0.748471
Target:  5'- uGcCGUUAcauuaaucacaaUGGGCGCGAacggacugaaaACGGCGCCu -3'
miRNA:   3'- gCaGCAAU------------ACCUGCGUU-----------UGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 69201 0.72 0.748471
Target:  5'- aCGUUGUUGaGGACGUGuacaauucAACGGCGCa- -3'
miRNA:   3'- -GCAGCAAUaCCUGCGU--------UUGCCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 39145 0.72 0.768078
Target:  5'- gGUCGUcgGUGGACGUuacgaccGCGGUGCgCAc -3'
miRNA:   3'- gCAGCAa-UACCUGCGuu-----UGCCGCG-GU- -5'
21263 3' -52.9 NC_004778.3 + 127498 0.71 0.813801
Target:  5'- uGcCGUUGacaacuuUGGGCGCAauAACGGUGCUg -3'
miRNA:   3'- gCaGCAAU-------ACCUGCGU--UUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 8896 0.71 0.814695
Target:  5'- --aCGggGUGG-CGCGccACGGCGCCGg -3'
miRNA:   3'- gcaGCaaUACCuGCGUu-UGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 126892 0.71 0.814695
Target:  5'- uGUCGUUGU--ACuGCuGGCGGCGCCGc -3'
miRNA:   3'- gCAGCAAUAccUG-CGuUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 65278 0.71 0.814695
Target:  5'- aCGaCGUgAUGGACGCccACcGCGCCAa -3'
miRNA:   3'- -GCaGCAaUACCUGCGuuUGcCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 85426 0.7 0.82353
Target:  5'- gCGaCGgcAUGGACGCG---GGCGCCGu -3'
miRNA:   3'- -GCaGCaaUACCUGCGUuugCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 83259 0.7 0.82353
Target:  5'- gCGUUGUUGcaGACGCGcggAACGGCGCg- -3'
miRNA:   3'- -GCAGCAAUacCUGCGU---UUGCCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 95297 0.7 0.832182
Target:  5'- gGUCGUgugGUGGAa-CAAACGGC-CCGa -3'
miRNA:   3'- gCAGCAa--UACCUgcGUUUGCCGcGGU- -5'
21263 3' -52.9 NC_004778.3 + 23501 0.7 0.847267
Target:  5'- aCGUCGUUGUGGgagacuuuaACGCGuaucgaaucgcCGGCGCgCAa -3'
miRNA:   3'- -GCAGCAAUACC---------UGCGUuu---------GCCGCG-GU- -5'
21263 3' -52.9 NC_004778.3 + 119140 0.69 0.872412
Target:  5'- -aUCGUUuauuuauuuaaAUcGGGCGCGggAACGGCGCCc -3'
miRNA:   3'- gcAGCAA-----------UA-CCUGCGU--UUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 67050 0.69 0.87761
Target:  5'- gGUCGgcccuGACGCcguacucgaaaaaaAAACGGCGCCGa -3'
miRNA:   3'- gCAGCaauacCUGCG--------------UUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 85247 0.69 0.879803
Target:  5'- --cCGUU-UGGugGCAAacgacgacauacACGGCGCCc -3'
miRNA:   3'- gcaGCAAuACCugCGUU------------UGCCGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.