miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21263 3' -52.9 NC_004778.3 + 111557 0.69 0.879803
Target:  5'- uCGUCGUUGagcuggcgaccGGGCGCGccaaagucacgGACGGCGCgCGg -3'
miRNA:   3'- -GCAGCAAUa----------CCUGCGU-----------UUGCCGCG-GU- -5'
21263 3' -52.9 NC_004778.3 + 9199 0.69 0.886961
Target:  5'- uGUUGUggaaaGUGGACGac-ACGGUGCCc -3'
miRNA:   3'- gCAGCAa----UACCUGCguuUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 46571 0.69 0.893882
Target:  5'- gGUCagGUUGUGcGACGCGGcACG-CGCCAa -3'
miRNA:   3'- gCAG--CAAUAC-CUGCGUU-UGCcGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 8785 0.69 0.893882
Target:  5'- aGUCGgc--GGACGCuuccaccaccACGGCGUCAa -3'
miRNA:   3'- gCAGCaauaCCUGCGuu--------UGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 43300 0.68 0.906364
Target:  5'- cCG-CGUUcaaaaacGUGcGGCGCGccGCGGCGCCGu -3'
miRNA:   3'- -GCaGCAA-------UAC-CUGCGUu-UGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 46539 0.68 0.913182
Target:  5'- ------aGUGGcagagcaagucGCGCGAACGGCGCCu -3'
miRNA:   3'- gcagcaaUACC-----------UGCGUUUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 97068 0.68 0.913182
Target:  5'- uGUUGaccGUGGAcagauaaccCGCGacGACGGCGCCGu -3'
miRNA:   3'- gCAGCaa-UACCU---------GCGU--UUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 38263 0.68 0.919119
Target:  5'- --------cGGACGCGGACGGCGUg- -3'
miRNA:   3'- gcagcaauaCCUGCGUUUGCCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 56951 0.68 0.919119
Target:  5'- cCGUUGcgacauGACGCAGAUGGgGCCGg -3'
miRNA:   3'- -GCAGCaauac-CUGCGUUUGCCgCGGU- -5'
21263 3' -52.9 NC_004778.3 + 62793 0.68 0.919119
Target:  5'- gGUCGUgccgGUGGACaCAAAUGGguggGCCGa -3'
miRNA:   3'- gCAGCAa---UACCUGcGUUUGCCg---CGGU- -5'
21263 3' -52.9 NC_004778.3 + 22449 0.68 0.919119
Target:  5'- uGUCGU--UGGugGCGGGC-GCGCa- -3'
miRNA:   3'- gCAGCAauACCugCGUUUGcCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 113893 0.68 0.924804
Target:  5'- gCG-CGUc--GGGCGaAGGCGGCGCCGc -3'
miRNA:   3'- -GCaGCAauaCCUGCgUUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 21655 0.68 0.924804
Target:  5'- -uUCGgcc--GGCGguGGCGGCGCCAu -3'
miRNA:   3'- gcAGCaauacCUGCguUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 20478 0.68 0.930237
Target:  5'- cCGUgCGUUGUGc-CGCcGAUGGUGCCGu -3'
miRNA:   3'- -GCA-GCAAUACcuGCGuUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 96871 0.68 0.93234
Target:  5'- uGUCGUacguaaacgugacgcUAUGcGCGU--ACGGCGCCGu -3'
miRNA:   3'- gCAGCA---------------AUACcUGCGuuUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 1660 0.67 0.940348
Target:  5'- gCGUCGUUGgcaccuucgguuUGGgugcggccagcaGCGCGAGCaGGCGCa- -3'
miRNA:   3'- -GCAGCAAU------------ACC------------UGCGUUUG-CCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 30041 0.67 0.940348
Target:  5'- uCGUCaGUaGUGaACGCAAACG-CGCCGu -3'
miRNA:   3'- -GCAG-CAaUACcUGCGUUUGCcGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 65460 0.67 0.945028
Target:  5'- gGUCGUugcccgauucUGUGcaaacguuGGCGCGGugGGCGuCCAu -3'
miRNA:   3'- gCAGCA----------AUAC--------CUGCGUUugCCGC-GGU- -5'
21263 3' -52.9 NC_004778.3 + 85516 0.67 0.945028
Target:  5'- gCGaUGUcAUGGACGCGGgcguuuGCGGCGgCGa -3'
miRNA:   3'- -GCaGCAaUACCUGCGUU------UGCCGCgGU- -5'
21263 3' -52.9 NC_004778.3 + 71435 0.67 0.949461
Target:  5'- uGUCGgcggGGGCGUAGGCgagGGUGUCGg -3'
miRNA:   3'- gCAGCaauaCCUGCGUUUG---CCGCGGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.