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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 71387 | 0.67 | 0.949461 |
Target: 5'- uGUCGgcggGGGCGUAGGCgagGGUGUCGg -3' miRNA: 3'- gCAGCaauaCCUGCGUUUG---CCGCGGU- -5' |
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21263 | 3' | -52.9 | NC_004778.3 | + | 71435 | 0.67 | 0.949461 |
Target: 5'- uGUCGgcggGGGCGUAGGCgagGGUGUCGg -3' miRNA: 3'- gCAGCaauaCCUGCGUUUG---CCGCGGU- -5' |
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21263 | 3' | -52.9 | NC_004778.3 | + | 98923 | 0.67 | 0.953649 |
Target: 5'- gCGUCGcuggggAUGGugGCGGcuugcACGcGCGCUg -3' miRNA: 3'- -GCAGCaa----UACCugCGUU-----UGC-CGCGGu -5' |
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21263 | 3' | -52.9 | NC_004778.3 | + | 121701 | 0.66 | 0.957597 |
Target: 5'- gGcCGgcGUGGGCGUGuugcuggccGGCGGCGCUu -3' miRNA: 3'- gCaGCaaUACCUGCGU---------UUGCCGCGGu -5' |
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21263 | 3' | -52.9 | NC_004778.3 | + | 85482 | 0.66 | 0.957597 |
Target: 5'- uGUC---AUGGACGCGGgcguuuGCGGCGgCGa -3' miRNA: 3'- gCAGcaaUACCUGCGUU------UGCCGCgGU- -5' |
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21263 | 3' | -52.9 | NC_004778.3 | + | 14583 | 0.66 | 0.964788 |
Target: 5'- --aCGgccUGGACGCcaacACGGCGUCAc -3' miRNA: 3'- gcaGCaauACCUGCGuu--UGCCGCGGU- -5' |
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21263 | 3' | -52.9 | NC_004778.3 | + | 15605 | 0.66 | 0.964788 |
Target: 5'- -uUUGgcGUGGucGCGCGgaGGCGGCGCUg -3' miRNA: 3'- gcAGCaaUACC--UGCGU--UUGCCGCGGu -5' |
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21263 | 3' | -52.9 | NC_004778.3 | + | 90450 | 0.66 | 0.968043 |
Target: 5'- uGUCGgccUGGcuUGCu-ACGGCGCCGc -3' miRNA: 3'- gCAGCaauACCu-GCGuuUGCCGCGGU- -5' |
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21263 | 3' | -52.9 | NC_004778.3 | + | 85570 | 0.66 | 0.971078 |
Target: 5'- aCGUCauacgcGUGGGCGaCGuguACGGCGUCGc -3' miRNA: 3'- -GCAGcaa---UACCUGC-GUu--UGCCGCGGU- -5' |
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21263 | 3' | -52.9 | NC_004778.3 | + | 92861 | 0.66 | 0.971078 |
Target: 5'- gCGUCGacAUGGACaCGc-CGGUGCCGu -3' miRNA: 3'- -GCAGCaaUACCUGcGUuuGCCGCGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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