Results 21 - 40 of 50 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 56951 | 0.68 | 0.919119 |
Target: 5'- cCGUUGcgacauGACGCAGAUGGgGCCGg -3' miRNA: 3'- -GCAGCaauac-CUGCGUUUGCCgCGGU- -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 22449 | 0.68 | 0.919119 |
Target: 5'- uGUCGU--UGGugGCGGGC-GCGCa- -3' miRNA: 3'- gCAGCAauACCugCGUUUGcCGCGgu -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 62793 | 0.68 | 0.919119 |
Target: 5'- gGUCGUgccgGUGGACaCAAAUGGguggGCCGa -3' miRNA: 3'- gCAGCAa---UACCUGcGUUUGCCg---CGGU- -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 97068 | 0.68 | 0.913182 |
Target: 5'- uGUUGaccGUGGAcagauaaccCGCGacGACGGCGCCGu -3' miRNA: 3'- gCAGCaa-UACCU---------GCGU--UUGCCGCGGU- -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 46539 | 0.68 | 0.913182 |
Target: 5'- ------aGUGGcagagcaagucGCGCGAACGGCGCCu -3' miRNA: 3'- gcagcaaUACC-----------UGCGUUUGCCGCGGu -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 43300 | 0.68 | 0.906364 |
Target: 5'- cCG-CGUUcaaaaacGUGcGGCGCGccGCGGCGCCGu -3' miRNA: 3'- -GCaGCAA-------UAC-CUGCGUu-UGCCGCGGU- -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 46571 | 0.69 | 0.893882 |
Target: 5'- gGUCagGUUGUGcGACGCGGcACG-CGCCAa -3' miRNA: 3'- gCAG--CAAUAC-CUGCGUU-UGCcGCGGU- -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 8785 | 0.69 | 0.893882 |
Target: 5'- aGUCGgc--GGACGCuuccaccaccACGGCGUCAa -3' miRNA: 3'- gCAGCaauaCCUGCGuu--------UGCCGCGGU- -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 9199 | 0.69 | 0.886961 |
Target: 5'- uGUUGUggaaaGUGGACGac-ACGGUGCCc -3' miRNA: 3'- gCAGCAa----UACCUGCguuUGCCGCGGu -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 85247 | 0.69 | 0.879803 |
Target: 5'- --cCGUU-UGGugGCAAacgacgacauacACGGCGCCc -3' miRNA: 3'- gcaGCAAuACCugCGUU------------UGCCGCGGu -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 111557 | 0.69 | 0.879803 |
Target: 5'- uCGUCGUUGagcuggcgaccGGGCGCGccaaagucacgGACGGCGCgCGg -3' miRNA: 3'- -GCAGCAAUa----------CCUGCGU-----------UUGCCGCG-GU- -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 67050 | 0.69 | 0.87761 |
Target: 5'- gGUCGgcccuGACGCcguacucgaaaaaaAAACGGCGCCGa -3' miRNA: 3'- gCAGCaauacCUGCG--------------UUUGCCGCGGU- -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 119140 | 0.69 | 0.872412 |
Target: 5'- -aUCGUUuauuuauuuaaAUcGGGCGCGggAACGGCGCCc -3' miRNA: 3'- gcAGCAA-----------UA-CCUGCGU--UUGCCGCGGu -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 23501 | 0.7 | 0.847267 |
Target: 5'- aCGUCGUUGUGGgagacuuuaACGCGuaucgaaucgcCGGCGCgCAa -3' miRNA: 3'- -GCAGCAAUACC---------UGCGUuu---------GCCGCG-GU- -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 95297 | 0.7 | 0.832182 |
Target: 5'- gGUCGUgugGUGGAa-CAAACGGC-CCGa -3' miRNA: 3'- gCAGCAa--UACCUgcGUUUGCCGcGGU- -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 85426 | 0.7 | 0.82353 |
Target: 5'- gCGaCGgcAUGGACGCG---GGCGCCGu -3' miRNA: 3'- -GCaGCaaUACCUGCGUuugCCGCGGU- -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 83259 | 0.7 | 0.82353 |
Target: 5'- gCGUUGUUGcaGACGCGcggAACGGCGCg- -3' miRNA: 3'- -GCAGCAAUacCUGCGU---UUGCCGCGgu -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 8896 | 0.71 | 0.814695 |
Target: 5'- --aCGggGUGG-CGCGccACGGCGCCGg -3' miRNA: 3'- gcaGCaaUACCuGCGUu-UGCCGCGGU- -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 65278 | 0.71 | 0.814695 |
Target: 5'- aCGaCGUgAUGGACGCccACcGCGCCAa -3' miRNA: 3'- -GCaGCAaUACCUGCGuuUGcCGCGGU- -5' |
|||||||
21263 | 3' | -52.9 | NC_004778.3 | + | 126892 | 0.71 | 0.814695 |
Target: 5'- uGUCGUUGU--ACuGCuGGCGGCGCCGc -3' miRNA: 3'- gCAGCAAUAccUG-CGuUUGCCGCGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home