miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21263 3' -52.9 NC_004778.3 + 1660 0.67 0.940348
Target:  5'- gCGUCGUUGgcaccuucgguuUGGgugcggccagcaGCGCGAGCaGGCGCa- -3'
miRNA:   3'- -GCAGCAAU------------ACC------------UGCGUUUG-CCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 6837 0.78 0.406962
Target:  5'- aCGggCGcccccugUGUGGACGCAGGCGGCGCg- -3'
miRNA:   3'- -GCa-GCa------AUACCUGCGUUUGCCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 8785 0.69 0.893882
Target:  5'- aGUCGgc--GGACGCuuccaccaccACGGCGUCAa -3'
miRNA:   3'- gCAGCaauaCCUGCGuu--------UGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 8896 0.71 0.814695
Target:  5'- --aCGggGUGG-CGCGccACGGCGCCGg -3'
miRNA:   3'- gcaGCaaUACCuGCGUu-UGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 9199 0.69 0.886961
Target:  5'- uGUUGUggaaaGUGGACGac-ACGGUGCCc -3'
miRNA:   3'- gCAGCAa----UACCUGCguuUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 14583 0.66 0.964788
Target:  5'- --aCGgccUGGACGCcaacACGGCGUCAc -3'
miRNA:   3'- gcaGCaauACCUGCGuu--UGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 15605 0.66 0.964788
Target:  5'- -uUUGgcGUGGucGCGCGgaGGCGGCGCUg -3'
miRNA:   3'- gcAGCaaUACC--UGCGU--UUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 19122 0.74 0.645556
Target:  5'- ---gGUUcgGGcGCGCGAGCGGCGCUg -3'
miRNA:   3'- gcagCAAuaCC-UGCGUUUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 20478 0.68 0.930237
Target:  5'- cCGUgCGUUGUGc-CGCcGAUGGUGCCGu -3'
miRNA:   3'- -GCA-GCAAUACcuGCGuUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 21655 0.68 0.924804
Target:  5'- -uUCGgcc--GGCGguGGCGGCGCCAu -3'
miRNA:   3'- gcAGCaauacCUGCguUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 22449 0.68 0.919119
Target:  5'- uGUCGU--UGGugGCGGGC-GCGCa- -3'
miRNA:   3'- gCAGCAauACCugCGUUUGcCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 23501 0.7 0.847267
Target:  5'- aCGUCGUUGUGGgagacuuuaACGCGuaucgaaucgcCGGCGCgCAa -3'
miRNA:   3'- -GCAGCAAUACC---------UGCGUuu---------GCCGCG-GU- -5'
21263 3' -52.9 NC_004778.3 + 30041 0.67 0.940348
Target:  5'- uCGUCaGUaGUGaACGCAAACG-CGCCGu -3'
miRNA:   3'- -GCAG-CAaUACcUGCGUUUGCcGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 30317 0.74 0.614036
Target:  5'- gCGUCGUcuucggaGUGGGCGCGuuUGGCgGCCAu -3'
miRNA:   3'- -GCAGCAa------UACCUGCGUuuGCCG-CGGU- -5'
21263 3' -52.9 NC_004778.3 + 38263 0.68 0.919119
Target:  5'- --------cGGACGCGGACGGCGUg- -3'
miRNA:   3'- gcagcaauaCCUGCGUUUGCCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 39145 0.72 0.768078
Target:  5'- gGUCGUcgGUGGACGUuacgaccGCGGUGCgCAc -3'
miRNA:   3'- gCAGCAa-UACCUGCGuu-----UGCCGCG-GU- -5'
21263 3' -52.9 NC_004778.3 + 43300 0.68 0.906364
Target:  5'- cCG-CGUUcaaaaacGUGcGGCGCGccGCGGCGCCGu -3'
miRNA:   3'- -GCaGCAA-------UAC-CUGCGUu-UGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 46539 0.68 0.913182
Target:  5'- ------aGUGGcagagcaagucGCGCGAACGGCGCCu -3'
miRNA:   3'- gcagcaaUACC-----------UGCGUUUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 46571 0.69 0.893882
Target:  5'- gGUCagGUUGUGcGACGCGGcACG-CGCCAa -3'
miRNA:   3'- gCAG--CAAUAC-CUGCGUU-UGCcGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 56951 0.68 0.919119
Target:  5'- cCGUUGcgacauGACGCAGAUGGgGCCGg -3'
miRNA:   3'- -GCAGCaauac-CUGCGUUUGCCgCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.