miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21263 3' -52.9 NC_004778.3 + 127498 0.71 0.813801
Target:  5'- uGcCGUUGacaacuuUGGGCGCAauAACGGUGCUg -3'
miRNA:   3'- gCaGCAAU-------ACCUGCGU--UUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 126892 0.71 0.814695
Target:  5'- uGUCGUUGU--ACuGCuGGCGGCGCCGc -3'
miRNA:   3'- gCAGCAAUAccUG-CGuUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 121701 0.66 0.957597
Target:  5'- gGcCGgcGUGGGCGUGuugcuggccGGCGGCGCUu -3'
miRNA:   3'- gCaGCaaUACCUGCGU---------UUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 119140 0.69 0.872412
Target:  5'- -aUCGUUuauuuauuuaaAUcGGGCGCGggAACGGCGCCc -3'
miRNA:   3'- gcAGCAA-----------UA-CCUGCGU--UUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 113893 0.68 0.924804
Target:  5'- gCG-CGUc--GGGCGaAGGCGGCGCCGc -3'
miRNA:   3'- -GCaGCAauaCCUGCgUUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 113159 1.09 0.00495
Target:  5'- uCGUCGUUAUGGACGCAAACGGCGCCAg -3'
miRNA:   3'- -GCAGCAAUACCUGCGUUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 111557 0.69 0.879803
Target:  5'- uCGUCGUUGagcuggcgaccGGGCGCGccaaagucacgGACGGCGCgCGg -3'
miRNA:   3'- -GCAGCAAUa----------CCUGCGU-----------UUGCCGCG-GU- -5'
21263 3' -52.9 NC_004778.3 + 98923 0.67 0.953649
Target:  5'- gCGUCGcuggggAUGGugGCGGcuugcACGcGCGCUg -3'
miRNA:   3'- -GCAGCaa----UACCugCGUU-----UGC-CGCGGu -5'
21263 3' -52.9 NC_004778.3 + 97289 0.72 0.748471
Target:  5'- uGcCGUUAcauuaaucacaaUGGGCGCGAacggacugaaaACGGCGCCu -3'
miRNA:   3'- gCaGCAAU------------ACCUGCGUU-----------UGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 97068 0.68 0.913182
Target:  5'- uGUUGaccGUGGAcagauaaccCGCGacGACGGCGCCGu -3'
miRNA:   3'- gCAGCaa-UACCU---------GCGU--UUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 96871 0.68 0.93234
Target:  5'- uGUCGUacguaaacgugacgcUAUGcGCGU--ACGGCGCCGu -3'
miRNA:   3'- gCAGCA---------------AUACcUGCGuuUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 95297 0.7 0.832182
Target:  5'- gGUCGUgugGUGGAa-CAAACGGC-CCGa -3'
miRNA:   3'- gCAGCAa--UACCUgcGUUUGCCGcGGU- -5'
21263 3' -52.9 NC_004778.3 + 92861 0.66 0.971078
Target:  5'- gCGUCGacAUGGACaCGc-CGGUGCCGu -3'
miRNA:   3'- -GCAGCaaUACCUGcGUuuGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 90450 0.66 0.968043
Target:  5'- uGUCGgccUGGcuUGCu-ACGGCGCCGc -3'
miRNA:   3'- gCAGCaauACCu-GCGuuUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 89888 0.72 0.728432
Target:  5'- aG-CGUgGUGGGCGCAAGCGGCuuGCg- -3'
miRNA:   3'- gCaGCAaUACCUGCGUUUGCCG--CGgu -5'
21263 3' -52.9 NC_004778.3 + 85570 0.66 0.971078
Target:  5'- aCGUCauacgcGUGGGCGaCGuguACGGCGUCGc -3'
miRNA:   3'- -GCAGcaa---UACCUGC-GUu--UGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 85516 0.67 0.945028
Target:  5'- gCGaUGUcAUGGACGCGGgcguuuGCGGCGgCGa -3'
miRNA:   3'- -GCaGCAaUACCUGCGUU------UGCCGCgGU- -5'
21263 3' -52.9 NC_004778.3 + 85482 0.66 0.957597
Target:  5'- uGUC---AUGGACGCGGgcguuuGCGGCGgCGa -3'
miRNA:   3'- gCAGcaaUACCUGCGUU------UGCCGCgGU- -5'
21263 3' -52.9 NC_004778.3 + 85426 0.7 0.82353
Target:  5'- gCGaCGgcAUGGACGCG---GGCGCCGu -3'
miRNA:   3'- -GCaGCaaUACCUGCGUuugCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 85247 0.69 0.879803
Target:  5'- --cCGUU-UGGugGCAAacgacgacauacACGGCGCCc -3'
miRNA:   3'- gcaGCAAuACCugCGUU------------UGCCGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.