miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21263 3' -52.9 NC_004778.3 + 83259 0.7 0.82353
Target:  5'- gCGUUGUUGcaGACGCGcggAACGGCGCg- -3'
miRNA:   3'- -GCAGCAAUacCUGCGU---UUGCCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 71435 0.67 0.949461
Target:  5'- uGUCGgcggGGGCGUAGGCgagGGUGUCGg -3'
miRNA:   3'- gCAGCaauaCCUGCGUUUG---CCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 71387 0.67 0.949461
Target:  5'- uGUCGgcggGGGCGUAGGCgagGGUGUCGg -3'
miRNA:   3'- gCAGCaauaCCUGCGUUUG---CCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 71315 0.67 0.949461
Target:  5'- uGUCGgcggGGGCGUAGGCgagGGUGUCGg -3'
miRNA:   3'- gCAGCaauaCCUGCGUUUG---CCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 69201 0.72 0.748471
Target:  5'- aCGUUGUUGaGGACGUGuacaauucAACGGCGCa- -3'
miRNA:   3'- -GCAGCAAUaCCUGCGU--------UUGCCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 67050 0.69 0.87761
Target:  5'- gGUCGgcccuGACGCcguacucgaaaaaaAAACGGCGCCGa -3'
miRNA:   3'- gCAGCaauacCUGCG--------------UUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 65460 0.67 0.945028
Target:  5'- gGUCGUugcccgauucUGUGcaaacguuGGCGCGGugGGCGuCCAu -3'
miRNA:   3'- gCAGCA----------AUAC--------CUGCGUUugCCGC-GGU- -5'
21263 3' -52.9 NC_004778.3 + 65278 0.71 0.814695
Target:  5'- aCGaCGUgAUGGACGCccACcGCGCCAa -3'
miRNA:   3'- -GCaGCAaUACCUGCGuuUGcCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 62793 0.68 0.919119
Target:  5'- gGUCGUgccgGUGGACaCAAAUGGguggGCCGa -3'
miRNA:   3'- gCAGCAa---UACCUGcGUUUGCCg---CGGU- -5'
21263 3' -52.9 NC_004778.3 + 62024 0.74 0.635049
Target:  5'- uGUCugc--GGACGCcgaGAGCGGCGCCAa -3'
miRNA:   3'- gCAGcaauaCCUGCG---UUUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 56951 0.68 0.919119
Target:  5'- cCGUUGcgacauGACGCAGAUGGgGCCGg -3'
miRNA:   3'- -GCAGCaauac-CUGCGUUUGCCgCGGU- -5'
21263 3' -52.9 NC_004778.3 + 46571 0.69 0.893882
Target:  5'- gGUCagGUUGUGcGACGCGGcACG-CGCCAa -3'
miRNA:   3'- gCAG--CAAUAC-CUGCGUU-UGCcGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 46539 0.68 0.913182
Target:  5'- ------aGUGGcagagcaagucGCGCGAACGGCGCCu -3'
miRNA:   3'- gcagcaaUACC-----------UGCGUUUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 43300 0.68 0.906364
Target:  5'- cCG-CGUUcaaaaacGUGcGGCGCGccGCGGCGCCGu -3'
miRNA:   3'- -GCaGCAA-------UAC-CUGCGUu-UGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 39145 0.72 0.768078
Target:  5'- gGUCGUcgGUGGACGUuacgaccGCGGUGCgCAc -3'
miRNA:   3'- gCAGCAa-UACCUGCGuu-----UGCCGCG-GU- -5'
21263 3' -52.9 NC_004778.3 + 38263 0.68 0.919119
Target:  5'- --------cGGACGCGGACGGCGUg- -3'
miRNA:   3'- gcagcaauaCCUGCGUUUGCCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 30317 0.74 0.614036
Target:  5'- gCGUCGUcuucggaGUGGGCGCGuuUGGCgGCCAu -3'
miRNA:   3'- -GCAGCAa------UACCUGCGUuuGCCG-CGGU- -5'
21263 3' -52.9 NC_004778.3 + 30041 0.67 0.940348
Target:  5'- uCGUCaGUaGUGaACGCAAACG-CGCCGu -3'
miRNA:   3'- -GCAG-CAaUACcUGCGUUUGCcGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 23501 0.7 0.847267
Target:  5'- aCGUCGUUGUGGgagacuuuaACGCGuaucgaaucgcCGGCGCgCAa -3'
miRNA:   3'- -GCAGCAAUACC---------UGCGUuu---------GCCGCG-GU- -5'
21263 3' -52.9 NC_004778.3 + 22449 0.68 0.919119
Target:  5'- uGUCGU--UGGugGCGGGC-GCGCa- -3'
miRNA:   3'- gCAGCAauACCugCGUUUGcCGCGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.