miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21263 3' -52.9 NC_004778.3 + 119140 0.69 0.872412
Target:  5'- -aUCGUUuauuuauuuaaAUcGGGCGCGggAACGGCGCCc -3'
miRNA:   3'- gcAGCAA-----------UA-CCUGCGU--UUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 22449 0.68 0.919119
Target:  5'- uGUCGU--UGGugGCGGGC-GCGCa- -3'
miRNA:   3'- gCAGCAauACCugCGUUUGcCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 95297 0.7 0.832182
Target:  5'- gGUCGUgugGUGGAa-CAAACGGC-CCGa -3'
miRNA:   3'- gCAGCAa--UACCUgcGUUUGCCGcGGU- -5'
21263 3' -52.9 NC_004778.3 + 69201 0.72 0.748471
Target:  5'- aCGUUGUUGaGGACGUGuacaauucAACGGCGCa- -3'
miRNA:   3'- -GCAGCAAUaCCUGCGU--------UUGCCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 46571 0.69 0.893882
Target:  5'- gGUCagGUUGUGcGACGCGGcACG-CGCCAa -3'
miRNA:   3'- gCAG--CAAUAC-CUGCGUU-UGCcGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 85426 0.7 0.82353
Target:  5'- gCGaCGgcAUGGACGCG---GGCGCCGu -3'
miRNA:   3'- -GCaGCaaUACCUGCGUuugCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 71387 0.67 0.949461
Target:  5'- uGUCGgcggGGGCGUAGGCgagGGUGUCGg -3'
miRNA:   3'- gCAGCaauaCCUGCGUUUG---CCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 71315 0.67 0.949461
Target:  5'- uGUCGgcggGGGCGUAGGCgagGGUGUCGg -3'
miRNA:   3'- gCAGCaauaCCUGCGUUUG---CCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 19122 0.74 0.645556
Target:  5'- ---gGUUcgGGcGCGCGAGCGGCGCUg -3'
miRNA:   3'- gcagCAAuaCC-UGCGUUUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 97289 0.72 0.748471
Target:  5'- uGcCGUUAcauuaaucacaaUGGGCGCGAacggacugaaaACGGCGCCu -3'
miRNA:   3'- gCaGCAAU------------ACCUGCGUU-----------UGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 39145 0.72 0.768078
Target:  5'- gGUCGUcgGUGGACGUuacgaccGCGGUGCgCAc -3'
miRNA:   3'- gCAGCAa-UACCUGCGuu-----UGCCGCG-GU- -5'
21263 3' -52.9 NC_004778.3 + 71435 0.67 0.949461
Target:  5'- uGUCGgcggGGGCGUAGGCgagGGUGUCGg -3'
miRNA:   3'- gCAGCaauaCCUGCGUUUG---CCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 127498 0.71 0.813801
Target:  5'- uGcCGUUGacaacuuUGGGCGCAauAACGGUGCUg -3'
miRNA:   3'- gCaGCAAU-------ACCUGCGU--UUGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 14583 0.66 0.964788
Target:  5'- --aCGgccUGGACGCcaacACGGCGUCAc -3'
miRNA:   3'- gcaGCaauACCUGCGuu--UGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 90450 0.66 0.968043
Target:  5'- uGUCGgccUGGcuUGCu-ACGGCGCCGc -3'
miRNA:   3'- gCAGCaauACCu-GCGuuUGCCGCGGU- -5'
21263 3' -52.9 NC_004778.3 + 83259 0.7 0.82353
Target:  5'- gCGUUGUUGcaGACGCGcggAACGGCGCg- -3'
miRNA:   3'- -GCAGCAAUacCUGCGU---UUGCCGCGgu -5'
21263 3' -52.9 NC_004778.3 + 62793 0.68 0.919119
Target:  5'- gGUCGUgccgGUGGACaCAAAUGGguggGCCGa -3'
miRNA:   3'- gCAGCAa---UACCUGcGUUUGCCg---CGGU- -5'
21263 3' -52.9 NC_004778.3 + 111557 0.69 0.879803
Target:  5'- uCGUCGUUGagcuggcgaccGGGCGCGccaaagucacgGACGGCGCgCGg -3'
miRNA:   3'- -GCAGCAAUa----------CCUGCGU-----------UUGCCGCG-GU- -5'
21263 3' -52.9 NC_004778.3 + 85247 0.69 0.879803
Target:  5'- --cCGUU-UGGugGCAAacgacgacauacACGGCGCCc -3'
miRNA:   3'- gcaGCAAuACCugCGUU------------UGCCGCGGu -5'
21263 3' -52.9 NC_004778.3 + 9199 0.69 0.886961
Target:  5'- uGUUGUggaaaGUGGACGac-ACGGUGCCc -3'
miRNA:   3'- gCAGCAa----UACCUGCguuUGCCGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.