miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21263 5' -50.6 NC_004778.3 + 39112 0.66 0.986393
Target:  5'- cGCAaguACGUGGUGCGCG-GcGGCGa-- -3'
miRNA:   3'- aUGU---UGCAUUACGCGCaCaUCGCguu -5'
21263 5' -50.6 NC_004778.3 + 61793 0.66 0.986393
Target:  5'- cGCGGCGUuggcGCGCGcUGgcuGCGCGg -3'
miRNA:   3'- aUGUUGCAuua-CGCGC-ACau-CGCGUu -5'
21263 5' -50.6 NC_004778.3 + 2534 0.66 0.98586
Target:  5'- gUGCAGCGUAuuaAUGCGgGcggcgaccuuuaguUGUcGCGCAAu -3'
miRNA:   3'- -AUGUUGCAU---UACGCgC--------------ACAuCGCGUU- -5'
21263 5' -50.6 NC_004778.3 + 36511 0.66 0.982537
Target:  5'- cUAUGACGUuggAGUGCaGCGUGccguuGCGCGAc -3'
miRNA:   3'- -AUGUUGCA---UUACG-CGCACau---CGCGUU- -5'
21263 5' -50.6 NC_004778.3 + 43981 0.66 0.982537
Target:  5'- gGCcGCGcAAUuaGCGCGcUGUAGCGCu- -3'
miRNA:   3'- aUGuUGCaUUA--CGCGC-ACAUCGCGuu -5'
21263 5' -50.6 NC_004778.3 + 17333 0.66 0.980325
Target:  5'- uUACGugGgugUGGUGCGCGg--GGCGCu- -3'
miRNA:   3'- -AUGUugC---AUUACGCGCacaUCGCGuu -5'
21263 5' -50.6 NC_004778.3 + 6833 0.66 0.980325
Target:  5'- cACGACGg---GCGCccccuGUGUGGaCGCAGg -3'
miRNA:   3'- aUGUUGCauuaCGCG-----CACAUC-GCGUU- -5'
21263 5' -50.6 NC_004778.3 + 61889 0.66 0.980093
Target:  5'- aACAAggUGUGGUGCGUauacaucGUGaGGCGCAAc -3'
miRNA:   3'- aUGUU--GCAUUACGCG-------CACaUCGCGUU- -5'
21263 5' -50.6 NC_004778.3 + 89884 0.66 0.979384
Target:  5'- gUGCAGCGUGGUGgGCGcaagcggcuuGCGCGc -3'
miRNA:   3'- -AUGUUGCAUUACgCGCacau------CGCGUu -5'
21263 5' -50.6 NC_004778.3 + 95570 0.66 0.975285
Target:  5'- gACAGCGUAGcGCGCGUcgcuaAGCuGCGAc -3'
miRNA:   3'- aUGUUGCAUUaCGCGCAca---UCG-CGUU- -5'
21263 5' -50.6 NC_004778.3 + 113023 0.67 0.966048
Target:  5'- aACGACG-AGUGC-UGUaGUGGCGCAu -3'
miRNA:   3'- aUGUUGCaUUACGcGCA-CAUCGCGUu -5'
21263 5' -50.6 NC_004778.3 + 7858 0.67 0.966048
Target:  5'- aACAGCaUAA-GCGCG-GUGGCGCc- -3'
miRNA:   3'- aUGUUGcAUUaCGCGCaCAUCGCGuu -5'
21263 5' -50.6 NC_004778.3 + 47368 0.67 0.96249
Target:  5'- cACAGCGUGcgGCGUuauuuugGGCGCGAc -3'
miRNA:   3'- aUGUUGCAUuaCGCGcaca---UCGCGUU- -5'
21263 5' -50.6 NC_004778.3 + 58319 0.67 0.96249
Target:  5'- gGCGGCGgcgGcgGCGaCGUcggGUGGCGCGc -3'
miRNA:   3'- aUGUUGCa--UuaCGC-GCA---CAUCGCGUu -5'
21263 5' -50.6 NC_004778.3 + 68594 0.67 0.96249
Target:  5'- gGCGGCGgcgGcgGCgGCGgcgGUGGCGCu- -3'
miRNA:   3'- aUGUUGCa--UuaCG-CGCa--CAUCGCGuu -5'
21263 5' -50.6 NC_004778.3 + 1765 0.67 0.95868
Target:  5'- cGCAACGUGuguuugaaggaGUGCGCGgacgGGcCGCAGa -3'
miRNA:   3'- aUGUUGCAU-----------UACGCGCaca-UC-GCGUU- -5'
21263 5' -50.6 NC_004778.3 + 60340 0.68 0.954613
Target:  5'- aACAGCGgcGUGC-CGUugcaaaagGUGGCGCGc -3'
miRNA:   3'- aUGUUGCauUACGcGCA--------CAUCGCGUu -5'
21263 5' -50.6 NC_004778.3 + 107903 0.68 0.954613
Target:  5'- cGCGACGcGGUGCuGCG-GUccaAGCGCAGc -3'
miRNA:   3'- aUGUUGCaUUACG-CGCaCA---UCGCGUU- -5'
21263 5' -50.6 NC_004778.3 + 82581 0.68 0.950284
Target:  5'- -uCGACGUGGUGguauuuaGCGUGUAGUGUu- -3'
miRNA:   3'- auGUUGCAUUACg------CGCACAUCGCGuu -5'
21263 5' -50.6 NC_004778.3 + 88646 0.68 0.950284
Target:  5'- --uGACGUAcugcagacuUGCGCGguugacgGUGGCGCAAu -3'
miRNA:   3'- augUUGCAUu--------ACGCGCa------CAUCGCGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.