Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 21263 | 5' | -50.6 | NC_004778.3 | + | 82581 | 0.68 | 0.950284 |
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Target: 5'- -uCGACGUGGUGguauuuaGCGUGUAGUGUu- -3' miRNA: 3'- auGUUGCAUUACg------CGCACAUCGCGuu -5' |
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| 21263 | 5' | -50.6 | NC_004778.3 | + | 103786 | 0.68 | 0.945213 |
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Target: 5'- cGCAACGcAAgaacgguUGCaCGUGUGGCGCGc -3' miRNA: 3'- aUGUUGCaUU-------ACGcGCACAUCGCGUu -5' |
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| 21263 | 5' | -50.6 | NC_004778.3 | + | 88646 | 0.68 | 0.950284 |
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Target: 5'- --uGACGUAcugcagacuUGCGCGguugacgGUGGCGCAAu -3' miRNA: 3'- augUUGCAUu--------ACGCGCa------CAUCGCGUU- -5' |
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| 21263 | 5' | -50.6 | NC_004778.3 | + | 89740 | 0.7 | 0.891999 |
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Target: 5'- aACAAUGc---GCGCGUGcGGCGCGAc -3' miRNA: 3'- aUGUUGCauuaCGCGCACaUCGCGUU- -5' |
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| 21263 | 5' | -50.6 | NC_004778.3 | + | 33260 | 0.7 | 0.877102 |
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Target: 5'- aACAuuGCGUAguucAUGUaCGUGUAGCGCGg -3' miRNA: 3'- aUGU--UGCAU----UACGcGCACAUCGCGUu -5' |
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| 21263 | 5' | -50.6 | NC_004778.3 | + | 74506 | 0.71 | 0.85288 |
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Target: 5'- gAC-ACGUuaaaagacucGGUGCGCGUGUuuuuGGCGCAc -3' miRNA: 3'- aUGuUGCA----------UUACGCGCACA----UCGCGUu -5' |
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| 21263 | 5' | -50.6 | NC_004778.3 | + | 289 | 0.74 | 0.720871 |
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Target: 5'- gUGCGgcACGUAAUcgcagucccaccugaGCGCGUGcUGGCGCAAg -3' miRNA: 3'- -AUGU--UGCAUUA---------------CGCGCAC-AUCGCGUU- -5' |
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| 21263 | 5' | -50.6 | NC_004778.3 | + | 113116 | 1.04 | 0.01216 |
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Target: 5'- cUACAACGUAAUGCGCGUGUAGCGCAAc -3' miRNA: 3'- -AUGUUGCAUUACGCGCACAUCGCGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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