miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21263 5' -50.6 NC_004778.3 + 113116 1.04 0.01216
Target:  5'- cUACAACGUAAUGCGCGUGUAGCGCAAc -3'
miRNA:   3'- -AUGUUGCAUUACGCGCACAUCGCGUU- -5'
21263 5' -50.6 NC_004778.3 + 289 0.74 0.720871
Target:  5'- gUGCGgcACGUAAUcgcagucccaccugaGCGCGUGcUGGCGCAAg -3'
miRNA:   3'- -AUGU--UGCAUUA---------------CGCGCAC-AUCGCGUU- -5'
21263 5' -50.6 NC_004778.3 + 74506 0.71 0.85288
Target:  5'- gAC-ACGUuaaaagacucGGUGCGCGUGUuuuuGGCGCAc -3'
miRNA:   3'- aUGuUGCA----------UUACGCGCACA----UCGCGUu -5'
21263 5' -50.6 NC_004778.3 + 33260 0.7 0.877102
Target:  5'- aACAuuGCGUAguucAUGUaCGUGUAGCGCGg -3'
miRNA:   3'- aUGU--UGCAU----UACGcGCACAUCGCGUu -5'
21263 5' -50.6 NC_004778.3 + 89740 0.7 0.891999
Target:  5'- aACAAUGc---GCGCGUGcGGCGCGAc -3'
miRNA:   3'- aUGUUGCauuaCGCGCACaUCGCGUU- -5'
21263 5' -50.6 NC_004778.3 + 103786 0.68 0.945213
Target:  5'- cGCAACGcAAgaacgguUGCaCGUGUGGCGCGc -3'
miRNA:   3'- aUGUUGCaUU-------ACGcGCACAUCGCGUu -5'
21263 5' -50.6 NC_004778.3 + 44370 0.68 0.945687
Target:  5'- cACGACGU--UGUGCGUGUuaauGUGCu- -3'
miRNA:   3'- aUGUUGCAuuACGCGCACAu---CGCGuu -5'
21263 5' -50.6 NC_004778.3 + 126142 0.68 0.945687
Target:  5'- cGCAGCGUcAUGCGCGgccuucauGCGCu- -3'
miRNA:   3'- aUGUUGCAuUACGCGCacau----CGCGuu -5'
21263 5' -50.6 NC_004778.3 + 88646 0.68 0.950284
Target:  5'- --uGACGUAcugcagacuUGCGCGguugacgGUGGCGCAAu -3'
miRNA:   3'- augUUGCAUu--------ACGCGCa------CAUCGCGUU- -5'
21263 5' -50.6 NC_004778.3 + 82581 0.68 0.950284
Target:  5'- -uCGACGUGGUGguauuuaGCGUGUAGUGUu- -3'
miRNA:   3'- auGUUGCAUUACg------CGCACAUCGCGuu -5'
21263 5' -50.6 NC_004778.3 + 107903 0.68 0.954613
Target:  5'- cGCGACGcGGUGCuGCG-GUccaAGCGCAGc -3'
miRNA:   3'- aUGUUGCaUUACG-CGCaCA---UCGCGUU- -5'
21263 5' -50.6 NC_004778.3 + 60340 0.68 0.954613
Target:  5'- aACAGCGgcGUGC-CGUugcaaaagGUGGCGCGc -3'
miRNA:   3'- aUGUUGCauUACGcGCA--------CAUCGCGUu -5'
21263 5' -50.6 NC_004778.3 + 1765 0.67 0.95868
Target:  5'- cGCAACGUGuguuugaaggaGUGCGCGgacgGGcCGCAGa -3'
miRNA:   3'- aUGUUGCAU-----------UACGCGCaca-UC-GCGUU- -5'
21263 5' -50.6 NC_004778.3 + 47368 0.67 0.96249
Target:  5'- cACAGCGUGcgGCGUuauuuugGGCGCGAc -3'
miRNA:   3'- aUGUUGCAUuaCGCGcaca---UCGCGUU- -5'
21263 5' -50.6 NC_004778.3 + 58319 0.67 0.96249
Target:  5'- gGCGGCGgcgGcgGCGaCGUcggGUGGCGCGc -3'
miRNA:   3'- aUGUUGCa--UuaCGC-GCA---CAUCGCGUu -5'
21263 5' -50.6 NC_004778.3 + 68594 0.67 0.96249
Target:  5'- gGCGGCGgcgGcgGCgGCGgcgGUGGCGCu- -3'
miRNA:   3'- aUGUUGCa--UuaCG-CGCa--CAUCGCGuu -5'
21263 5' -50.6 NC_004778.3 + 7858 0.67 0.966048
Target:  5'- aACAGCaUAA-GCGCG-GUGGCGCc- -3'
miRNA:   3'- aUGUUGcAUUaCGCGCaCAUCGCGuu -5'
21263 5' -50.6 NC_004778.3 + 113023 0.67 0.966048
Target:  5'- aACGACG-AGUGC-UGUaGUGGCGCAu -3'
miRNA:   3'- aUGUUGCaUUACGcGCA-CAUCGCGUu -5'
21263 5' -50.6 NC_004778.3 + 95570 0.66 0.975285
Target:  5'- gACAGCGUAGcGCGCGUcgcuaAGCuGCGAc -3'
miRNA:   3'- aUGUUGCAUUaCGCGCAca---UCG-CGUU- -5'
21263 5' -50.6 NC_004778.3 + 89884 0.66 0.979384
Target:  5'- gUGCAGCGUGGUGgGCGcaagcggcuuGCGCGc -3'
miRNA:   3'- -AUGUUGCAUUACgCGCacau------CGCGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.