Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 21263 | 5' | -50.6 | NC_004778.3 | + | 89740 | 0.7 | 0.891999 |
|
Target: 5'- aACAAUGc---GCGCGUGcGGCGCGAc -3' miRNA: 3'- aUGUUGCauuaCGCGCACaUCGCGUU- -5' |
|||||||
| 21263 | 5' | -50.6 | NC_004778.3 | + | 89884 | 0.66 | 0.979384 |
|
Target: 5'- gUGCAGCGUGGUGgGCGcaagcggcuuGCGCGc -3' miRNA: 3'- -AUGUUGCAUUACgCGCacau------CGCGUu -5' |
|||||||
| 21263 | 5' | -50.6 | NC_004778.3 | + | 95570 | 0.66 | 0.975285 |
|
Target: 5'- gACAGCGUAGcGCGCGUcgcuaAGCuGCGAc -3' miRNA: 3'- aUGUUGCAUUaCGCGCAca---UCG-CGUU- -5' |
|||||||
| 21263 | 5' | -50.6 | NC_004778.3 | + | 103786 | 0.68 | 0.945213 |
|
Target: 5'- cGCAACGcAAgaacgguUGCaCGUGUGGCGCGc -3' miRNA: 3'- aUGUUGCaUU-------ACGcGCACAUCGCGUu -5' |
|||||||
| 21263 | 5' | -50.6 | NC_004778.3 | + | 107903 | 0.68 | 0.954613 |
|
Target: 5'- cGCGACGcGGUGCuGCG-GUccaAGCGCAGc -3' miRNA: 3'- aUGUUGCaUUACG-CGCaCA---UCGCGUU- -5' |
|||||||
| 21263 | 5' | -50.6 | NC_004778.3 | + | 113023 | 0.67 | 0.966048 |
|
Target: 5'- aACGACG-AGUGC-UGUaGUGGCGCAu -3' miRNA: 3'- aUGUUGCaUUACGcGCA-CAUCGCGUu -5' |
|||||||
| 21263 | 5' | -50.6 | NC_004778.3 | + | 113116 | 1.04 | 0.01216 |
|
Target: 5'- cUACAACGUAAUGCGCGUGUAGCGCAAc -3' miRNA: 3'- -AUGUUGCAUUACGCGCACAUCGCGUU- -5' |
|||||||
| 21263 | 5' | -50.6 | NC_004778.3 | + | 126142 | 0.68 | 0.945687 |
|
Target: 5'- cGCAGCGUcAUGCGCGgccuucauGCGCu- -3' miRNA: 3'- aUGUUGCAuUACGCGCacau----CGCGuu -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home