miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21264 3' -53 NC_004778.3 + 90707 0.66 0.941564
Target:  5'- cUCG---GCGGC--GAGCGCUGCCACu -3'
miRNA:   3'- aAGUucaUGCCGuuCUCGUGGUGGUG- -5'
21264 3' -53 NC_004778.3 + 65951 0.66 0.936565
Target:  5'- gUUCGGGUugGGUAGGuGGCACUucugguGCC-Ca -3'
miRNA:   3'- -AAGUUCAugCCGUUC-UCGUGG------UGGuG- -5'
21264 3' -53 NC_004778.3 + 112636 0.66 0.936565
Target:  5'- cUCGAGUucucggccGCuGGCGcGAGCgACUGCCGCa -3'
miRNA:   3'- aAGUUCA--------UG-CCGUuCUCG-UGGUGGUG- -5'
21264 3' -53 NC_004778.3 + 81978 0.66 0.936565
Target:  5'- -cCAAugGCGGCuauAGA-CGCCGCCGCa -3'
miRNA:   3'- aaGUUcaUGCCGu--UCUcGUGGUGGUG- -5'
21264 3' -53 NC_004778.3 + 121416 0.66 0.931301
Target:  5'- -aCGGuGUGcCGGC-AGAGCGaccCCGCCGCa -3'
miRNA:   3'- aaGUU-CAU-GCCGuUCUCGU---GGUGGUG- -5'
21264 3' -53 NC_004778.3 + 38721 0.66 0.931301
Target:  5'- cUCGccgcAGUuuuGCGGCAGGuuggaGCCGCCGCg -3'
miRNA:   3'- aAGU----UCA---UGCCGUUCucg--UGGUGGUG- -5'
21264 3' -53 NC_004778.3 + 4110 0.66 0.927459
Target:  5'- -aCGAGUAcaugacgcgcagaauCGGCGAGGGCAagcgggugcuuauCCACUGCu -3'
miRNA:   3'- aaGUUCAU---------------GCCGUUCUCGU-------------GGUGGUG- -5'
21264 3' -53 NC_004778.3 + 103041 0.67 0.919978
Target:  5'- -cCAAGUuuGGCGGGcaCACCACCAg -3'
miRNA:   3'- aaGUUCAugCCGUUCucGUGGUGGUg -5'
21264 3' -53 NC_004778.3 + 47924 0.67 0.919384
Target:  5'- gUUCAccgacauGGUggacaGCGGCGcuaAGGGCAgCGCCGCu -3'
miRNA:   3'- -AAGU-------UCA-----UGCCGU---UCUCGUgGUGGUG- -5'
21264 3' -53 NC_004778.3 + 123886 0.67 0.901009
Target:  5'- aUUCAAGUGCaGCAugugcaauAGAGCGaCACCGa -3'
miRNA:   3'- -AAGUUCAUGcCGU--------UCUCGUgGUGGUg -5'
21264 3' -53 NC_004778.3 + 23486 0.68 0.879719
Target:  5'- -aCGAGUacACGGCGcaaauuuGGGCAUCgACCACa -3'
miRNA:   3'- aaGUUCA--UGCCGUu------CUCGUGG-UGGUG- -5'
21264 3' -53 NC_004778.3 + 60692 0.68 0.872126
Target:  5'- aUCGc--GCGGCAGcAGCACCAuCCGCg -3'
miRNA:   3'- aAGUucaUGCCGUUcUCGUGGU-GGUG- -5'
21264 3' -53 NC_004778.3 + 125957 0.68 0.872126
Target:  5'- gUUCAGGaggaaaagGCGGC-GGAGCugCAgCGCa -3'
miRNA:   3'- -AAGUUCa-------UGCCGuUCUCGugGUgGUG- -5'
21264 3' -53 NC_004778.3 + 47132 0.68 0.872126
Target:  5'- -aCAAGcgcguCGGCGuGAGCGCCGgCGCu -3'
miRNA:   3'- aaGUUCau---GCCGUuCUCGUGGUgGUG- -5'
21264 3' -53 NC_004778.3 + 74882 0.68 0.864294
Target:  5'- -aCAAGUuugACGGCGAGAcGCAC-ACCGg -3'
miRNA:   3'- aaGUUCA---UGCCGUUCU-CGUGgUGGUg -5'
21264 3' -53 NC_004778.3 + 4891 0.68 0.856229
Target:  5'- --aAAGUACGGCGAGucGUACCAUuugUACa -3'
miRNA:   3'- aagUUCAUGCCGUUCu-CGUGGUG---GUG- -5'
21264 3' -53 NC_004778.3 + 84630 0.68 0.856229
Target:  5'- gUUCAaugcGGUGCaccaGCAGGGGCACCGCUucgaGCa -3'
miRNA:   3'- -AAGU----UCAUGc---CGUUCUCGUGGUGG----UG- -5'
21264 3' -53 NC_004778.3 + 25306 0.69 0.839431
Target:  5'- -gCAAGaACGuGCAGGuuuGCACgCGCCGCa -3'
miRNA:   3'- aaGUUCaUGC-CGUUCu--CGUG-GUGGUG- -5'
21264 3' -53 NC_004778.3 + 31408 0.69 0.839431
Target:  5'- -gCAAGUuucuCGGCGcgaGGuGCGCgCGCCACg -3'
miRNA:   3'- aaGUUCAu---GCCGU---UCuCGUG-GUGGUG- -5'
21264 3' -53 NC_004778.3 + 82721 0.69 0.828059
Target:  5'- -aCAGGUGCGGCAAc-GCGuucaaacgguccccCCGCCGCg -3'
miRNA:   3'- aaGUUCAUGCCGUUcuCGU--------------GGUGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.