miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21264 5' -53 NC_004778.3 + 14727 0.66 0.963102
Target:  5'- uUGGCGuccaggccgUCCACAaugC-UGGCGCACa -3'
miRNA:   3'- -ACCGCcaa------AGGUGUga-GaACUGCGUG- -5'
21264 5' -53 NC_004778.3 + 47559 0.66 0.963102
Target:  5'- gUGGCGcGUggUCCACGC-----GCGCGCg -3'
miRNA:   3'- -ACCGC-CAa-AGGUGUGagaacUGCGUG- -5'
21264 5' -53 NC_004778.3 + 45780 0.66 0.963102
Target:  5'- cUGGUGGUgUCCGCG-UCgUUGGCGUuCg -3'
miRNA:   3'- -ACCGCCAaAGGUGUgAG-AACUGCGuG- -5'
21264 5' -53 NC_004778.3 + 36858 0.66 0.9471
Target:  5'- cGGCGGU----GCGCgUCUUGGCgaGCGCg -3'
miRNA:   3'- aCCGCCAaaggUGUG-AGAACUG--CGUG- -5'
21264 5' -53 NC_004778.3 + 110266 0.67 0.937604
Target:  5'- cGGcCGGUgcCCaaGCGCUCggcGCGCACg -3'
miRNA:   3'- aCC-GCCAaaGG--UGUGAGaacUGCGUG- -5'
21264 5' -53 NC_004778.3 + 113945 0.67 0.921436
Target:  5'- cGGCGGaUggCGCACga-UGACGUACa -3'
miRNA:   3'- aCCGCCaAagGUGUGagaACUGCGUG- -5'
21264 5' -53 NC_004778.3 + 98052 0.67 0.915531
Target:  5'- aUGGCGGUUgaaCCGCuGCcgUCgaugaUGGCGUACa -3'
miRNA:   3'- -ACCGCCAAa--GGUG-UG--AGa----ACUGCGUG- -5'
21264 5' -53 NC_004778.3 + 107840 0.67 0.915531
Target:  5'- gUGGCGGccUCCACGCgcaaggUUUcGuCGCGCg -3'
miRNA:   3'- -ACCGCCaaAGGUGUGa-----GAA-CuGCGUG- -5'
21264 5' -53 NC_004778.3 + 110002 0.68 0.909369
Target:  5'- cGGUGGUgaCCACGgUgUUucGGCGCGCc -3'
miRNA:   3'- aCCGCCAaaGGUGUgAgAA--CUGCGUG- -5'
21264 5' -53 NC_004778.3 + 2270 0.68 0.902953
Target:  5'- ---aGGUUUCCggaccgcgacGCGCUCUUGGCaGCAUg -3'
miRNA:   3'- accgCCAAAGG----------UGUGAGAACUG-CGUG- -5'
21264 5' -53 NC_004778.3 + 36689 0.68 0.902953
Target:  5'- cGGCcguGGgcaacaCCGCGCUCgccaaGACGCGCa -3'
miRNA:   3'- aCCG---CCaaa---GGUGUGAGaa---CUGCGUG- -5'
21264 5' -53 NC_004778.3 + 104149 0.68 0.901639
Target:  5'- gGGCGGcgcgauggaCAgAUUCUUGAUGCGCc -3'
miRNA:   3'- aCCGCCaaag-----GUgUGAGAACUGCGUG- -5'
21264 5' -53 NC_004778.3 + 57008 0.68 0.896285
Target:  5'- aGGCGaGUUUgccgcCUACACUU-UGugGCGCa -3'
miRNA:   3'- aCCGC-CAAA-----GGUGUGAGaACugCGUG- -5'
21264 5' -53 NC_004778.3 + 7159 0.68 0.889368
Target:  5'- gGGCGGcgcgCCGagcacuaGCUCguugaggUGGCGCACa -3'
miRNA:   3'- aCCGCCaaa-GGUg------UGAGa------ACUGCGUG- -5'
21264 5' -53 NC_004778.3 + 8659 0.68 0.887245
Target:  5'- cGGUGGUUUcgucugcuaccacgCCGCGCUUgcgGaACGCGCc -3'
miRNA:   3'- aCCGCCAAA--------------GGUGUGAGaa-C-UGCGUG- -5'
21264 5' -53 NC_004778.3 + 128613 0.72 0.729786
Target:  5'- cGGCGGagg-CAUGCUCgaGACGCACu -3'
miRNA:   3'- aCCGCCaaagGUGUGAGaaCUGCGUG- -5'
21264 5' -53 NC_004778.3 + 14689 0.72 0.719523
Target:  5'- cGcGCGGUcgUCCgGCACgacgUGACGCACg -3'
miRNA:   3'- aC-CGCCAa-AGG-UGUGaga-ACUGCGUG- -5'
21264 5' -53 NC_004778.3 + 41228 0.72 0.709178
Target:  5'- gUGGUGGUguugggcaCCGCGCUg--GACGCGCg -3'
miRNA:   3'- -ACCGCCAaa------GGUGUGAgaaCUGCGUG- -5'
21264 5' -53 NC_004778.3 + 6346 0.72 0.688288
Target:  5'- gGGUGGg--CCAUuuuGCUCgUGGCGCACc -3'
miRNA:   3'- aCCGCCaaaGGUG---UGAGaACUGCGUG- -5'
21264 5' -53 NC_004778.3 + 115279 1.1 0.003805
Target:  5'- cUGGCGGUUUCCACACUCUUGACGCACu -3'
miRNA:   3'- -ACCGCCAAAGGUGUGAGAACUGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.