miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21265 3' -56.1 NC_004778.3 + 34015 0.66 0.890311
Target:  5'- gAUGgGCGUGCCGGugaugcACCAgcgguuAUCGGCGUu -3'
miRNA:   3'- gUACgCGUGCGGCC------UGGU------UAGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 39767 0.66 0.883403
Target:  5'- --gGUGCcCGCCGGACUGuccgUGGCGg -3'
miRNA:   3'- guaCGCGuGCGGCCUGGUua--GCUGCa -5'
21265 3' -56.1 NC_004778.3 + 61788 0.66 0.883403
Target:  5'- -cUGCGCGCGUCgcugguGGGCCAaccacaguGUUGugGUu -3'
miRNA:   3'- guACGCGUGCGG------CCUGGU--------UAGCugCA- -5'
21265 3' -56.1 NC_004778.3 + 14529 0.66 0.883403
Target:  5'- gCGUGCGuCACGUCGuGCCGGaCGACc- -3'
miRNA:   3'- -GUACGC-GUGCGGCcUGGUUaGCUGca -5'
21265 3' -56.1 NC_004778.3 + 82554 0.66 0.883403
Target:  5'- -uUGCGCACgcuucuagaaauGCCGG-CCAcucccAUCGACa- -3'
miRNA:   3'- guACGCGUG------------CGGCCuGGU-----UAGCUGca -5'
21265 3' -56.1 NC_004778.3 + 115565 0.66 0.876268
Target:  5'- --aGCGCugGCCaaGGACCAGUUcaaGUa -3'
miRNA:   3'- guaCGCGugCGG--CCUGGUUAGcugCA- -5'
21265 3' -56.1 NC_004778.3 + 26235 0.66 0.868913
Target:  5'- --aGCGCgauuauguacaGCGCCGuGGCCA--CGACGg -3'
miRNA:   3'- guaCGCG-----------UGCGGC-CUGGUuaGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 22001 0.66 0.868913
Target:  5'- --cGUGUACGCC-GACUugaaAAUCGGCGg -3'
miRNA:   3'- guaCGCGUGCGGcCUGG----UUAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 119007 0.66 0.868913
Target:  5'- gCGUGCGCGCGCCGuGuCUGuUCcGCGa -3'
miRNA:   3'- -GUACGCGUGCGGC-CuGGUuAGcUGCa -5'
21265 3' -56.1 NC_004778.3 + 92861 0.66 0.868165
Target:  5'- --cGUGCACGCUucGGCCGAgaacggcUCGGCGUc -3'
miRNA:   3'- guaCGCGUGCGGc-CUGGUU-------AGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 77369 0.66 0.861341
Target:  5'- --cGcCGCGCGCUGGugCAAUgCGcACGc -3'
miRNA:   3'- guaC-GCGUGCGGCCugGUUA-GC-UGCa -5'
21265 3' -56.1 NC_004778.3 + 95013 0.66 0.861341
Target:  5'- cCGUGCGCcgacgggcagguGCGCCuGGACCAcccCGGCc- -3'
miRNA:   3'- -GUACGCG------------UGCGG-CCUGGUua-GCUGca -5'
21265 3' -56.1 NC_004778.3 + 112351 0.67 0.85356
Target:  5'- cUAUGCGCgaggGCGCCGagaacgaaGugCAGUCGGCc- -3'
miRNA:   3'- -GUACGCG----UGCGGC--------CugGUUAGCUGca -5'
21265 3' -56.1 NC_004778.3 + 9059 0.67 0.845575
Target:  5'- --cGCGCucgaGCGCCGGcUCAaugaguccGUCGACGg -3'
miRNA:   3'- guaCGCG----UGCGGCCuGGU--------UAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 43288 0.67 0.845575
Target:  5'- aCGUGCgGCGCGCCGcGGCgCcGUCGAa-- -3'
miRNA:   3'- -GUACG-CGUGCGGC-CUG-GuUAGCUgca -5'
21265 3' -56.1 NC_004778.3 + 4368 0.67 0.837394
Target:  5'- gGUGCaauGCACGCC-GACCAgcAUCGuCGg -3'
miRNA:   3'- gUACG---CGUGCGGcCUGGU--UAGCuGCa -5'
21265 3' -56.1 NC_004778.3 + 69618 0.67 0.837394
Target:  5'- gCGUGuCGuCGCGCCGGucaACCAAccacugcauuuUCGGCGc -3'
miRNA:   3'- -GUAC-GC-GUGCGGCC---UGGUU-----------AGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 118889 0.67 0.829023
Target:  5'- uGUGCGCcgccGCGCCGaGGCCAAgCGcACa- -3'
miRNA:   3'- gUACGCG----UGCGGC-CUGGUUaGC-UGca -5'
21265 3' -56.1 NC_004778.3 + 61164 0.67 0.829023
Target:  5'- --cGCuGCACGCCGGACgAAguaaagaaCGACa- -3'
miRNA:   3'- guaCG-CGUGCGGCCUGgUUa-------GCUGca -5'
21265 3' -56.1 NC_004778.3 + 113890 0.67 0.829023
Target:  5'- --cGgGCGCGUCGGGCgAAggCGGCGc -3'
miRNA:   3'- guaCgCGUGCGGCCUGgUUa-GCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.