miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21265 3' -56.1 NC_004778.3 + 4368 0.67 0.837394
Target:  5'- gGUGCaauGCACGCC-GACCAgcAUCGuCGg -3'
miRNA:   3'- gUACG---CGUGCGGcCUGGU--UAGCuGCa -5'
21265 3' -56.1 NC_004778.3 + 113890 0.67 0.829023
Target:  5'- --cGgGCGCGUCGGGCgAAggCGGCGc -3'
miRNA:   3'- guaCgCGUGCGGCCUGgUUa-GCUGCa -5'
21265 3' -56.1 NC_004778.3 + 58297 0.68 0.784608
Target:  5'- gGUG-GCGCGCUGGGCUuugcaggcGUCGGCGc -3'
miRNA:   3'- gUACgCGUGCGGCCUGGu-------UAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 29477 0.68 0.775273
Target:  5'- --aGCGCGCGCCGcGCCAccuUCGAa-- -3'
miRNA:   3'- guaCGCGUGCGGCcUGGUu--AGCUgca -5'
21265 3' -56.1 NC_004778.3 + 49533 0.68 0.756222
Target:  5'- --gGCGCugGCCGGccCCAAcuaccUCGACu- -3'
miRNA:   3'- guaCGCGugCGGCCu-GGUU-----AGCUGca -5'
21265 3' -56.1 NC_004778.3 + 73314 0.68 0.756222
Target:  5'- --cGCGCACGaCC--GCCAAuuUCGACGUa -3'
miRNA:   3'- guaCGCGUGC-GGccUGGUU--AGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 4964 0.68 0.784608
Target:  5'- uCAUGCGUGCGCCGcGacauuGCCAcgCG-CGUu -3'
miRNA:   3'- -GUACGCGUGCGGC-C-----UGGUuaGCuGCA- -5'
21265 3' -56.1 NC_004778.3 + 104514 0.69 0.736726
Target:  5'- --gGCGCGCGCCG-ACCgAGUC-ACGUa -3'
miRNA:   3'- guaCGCGUGCGGCcUGG-UUAGcUGCA- -5'
21265 3' -56.1 NC_004778.3 + 121689 0.69 0.710841
Target:  5'- gCGUGCGCuucacgugcaggcccGCGUCGGGCaCGuuGUCGGCGc -3'
miRNA:   3'- -GUACGCG---------------UGCGGCCUG-GU--UAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 117102 0.69 0.716861
Target:  5'- -uUGCgGCgACGCUGGGCC-GUCGACa- -3'
miRNA:   3'- guACG-CG-UGCGGCCUGGuUAGCUGca -5'
21265 3' -56.1 NC_004778.3 + 115079 0.69 0.706814
Target:  5'- gGUGCGCACGCCGG-CUug-CGcuuuaGCGUc -3'
miRNA:   3'- gUACGCGUGCGGCCuGGuuaGC-----UGCA- -5'
21265 3' -56.1 NC_004778.3 + 47406 0.69 0.706814
Target:  5'- --cGCGCGCGCgUGGACCAcgCGcCa- -3'
miRNA:   3'- guaCGCGUGCG-GCCUGGUuaGCuGca -5'
21265 3' -56.1 NC_004778.3 + 116030 0.69 0.726836
Target:  5'- gAUGCGCACGUCG-AUUggUcCGGCGUg -3'
miRNA:   3'- gUACGCGUGCGGCcUGGuuA-GCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 118935 0.69 0.746525
Target:  5'- -uUGUGCGCGCCGG-CCGcgCcGCGc -3'
miRNA:   3'- guACGCGUGCGGCCuGGUuaGcUGCa -5'
21265 3' -56.1 NC_004778.3 + 29339 0.69 0.726836
Target:  5'- --gGCGCGCGCUGGggugcGCCAAgCGGCuGUa -3'
miRNA:   3'- guaCGCGUGCGGCC-----UGGUUaGCUG-CA- -5'
21265 3' -56.1 NC_004778.3 + 61784 0.7 0.686536
Target:  5'- --gGCGCGCGCUGG-CUGcgCGGCGc -3'
miRNA:   3'- guaCGCGUGCGGCCuGGUuaGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 5739 0.7 0.686536
Target:  5'- -uUGCGUcaACGCCgcGGACC--UCGACGUu -3'
miRNA:   3'- guACGCG--UGCGG--CCUGGuuAGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 51208 0.7 0.693658
Target:  5'- aUAUGCGCAUGCCuGACCAacuuaauacuuugcGagGACGg -3'
miRNA:   3'- -GUACGCGUGCGGcCUGGU--------------UagCUGCa -5'
21265 3' -56.1 NC_004778.3 + 38440 0.7 0.696703
Target:  5'- --cGUGCGCGCUGGcgcagAUCAGccUCGACGUg -3'
miRNA:   3'- guaCGCGUGCGGCC-----UGGUU--AGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 9436 0.71 0.624887
Target:  5'- --cGCGCACGuuGGACaCGGccgucgucUCGGCGg -3'
miRNA:   3'- guaCGCGUGCggCCUG-GUU--------AGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.