miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21265 3' -56.1 NC_004778.3 + 116192 1.08 0.002879
Target:  5'- aCAUGCGCACGCCGGACCAAUCGACGUg -3'
miRNA:   3'- -GUACGCGUGCGGCCUGGUUAGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 36704 0.76 0.3607
Target:  5'- --cGCGCGCGCCGGuuCCAAaugCGGCGc -3'
miRNA:   3'- guaCGCGUGCGGCCu-GGUUa--GCUGCa -5'
21265 3' -56.1 NC_004778.3 + 61664 0.74 0.465391
Target:  5'- --cGCGCAUGCUGGGCCAGcCGcCGa -3'
miRNA:   3'- guaCGCGUGCGGCCUGGUUaGCuGCa -5'
21265 3' -56.1 NC_004778.3 + 10420 0.73 0.474822
Target:  5'- aAUGCGC-CGCCGGucccgcGCgCAAUCGGCGc -3'
miRNA:   3'- gUACGCGuGCGGCC------UG-GUUAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 35058 0.73 0.484347
Target:  5'- cCAUGCGCuugcgguauaACGCCGcuGCCGagGUCGACGUg -3'
miRNA:   3'- -GUACGCG----------UGCGGCc-UGGU--UAGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 115646 0.73 0.513448
Target:  5'- aCGUGCuGCACGCCGGGCau-UUGGCu- -3'
miRNA:   3'- -GUACG-CGUGCGGCCUGguuAGCUGca -5'
21265 3' -56.1 NC_004778.3 + 32271 0.73 0.493963
Target:  5'- --cGCGCACGCUGG-CCGG-CGGCGc -3'
miRNA:   3'- guaCGCGUGCGGCCuGGUUaGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 60149 0.72 0.583784
Target:  5'- --gGUGCugGCCGG-CgAAUCGugGUu -3'
miRNA:   3'- guaCGCGugCGGCCuGgUUAGCugCA- -5'
21265 3' -56.1 NC_004778.3 + 33147 0.72 0.563415
Target:  5'- gAUGCGCACGCggaaGGACgCAaacguacacacGUCGACGc -3'
miRNA:   3'- gUACGCGUGCGg---CCUG-GU-----------UAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 9436 0.71 0.624887
Target:  5'- --cGCGCACGuuGGACaCGGccgucgucUCGGCGg -3'
miRNA:   3'- guaCGCGUGCggCCUG-GUU--------AGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 90647 0.71 0.594024
Target:  5'- -uUGCGCACGCCGucaacgucaGCgCGGUCGACGc -3'
miRNA:   3'- guACGCGUGCGGCc--------UG-GUUAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 56962 0.71 0.598129
Target:  5'- aCGUGUGCcgcggcgugaacacgGCGCUGGACCugugCGGCGg -3'
miRNA:   3'- -GUACGCG---------------UGCGGCCUGGuua-GCUGCa -5'
21265 3' -56.1 NC_004778.3 + 34884 0.71 0.624887
Target:  5'- uGUGCGCACGUCG-ACCucggcagCGGCGUu -3'
miRNA:   3'- gUACGCGUGCGGCcUGGuua----GCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 10250 0.71 0.632103
Target:  5'- aGUGCGCagcgcgccgauugcGCGCgGGACCGG-CGGCGc -3'
miRNA:   3'- gUACGCG--------------UGCGgCCUGGUUaGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 5739 0.7 0.686536
Target:  5'- -uUGCGUcaACGCCgcGGACC--UCGACGUu -3'
miRNA:   3'- guACGCG--UGCGG--CCUGGuuAGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 51208 0.7 0.693658
Target:  5'- aUAUGCGCAUGCCuGACCAacuuaauacuuugcGagGACGg -3'
miRNA:   3'- -GUACGCGUGCGGcCUGGU--------------UagCUGCa -5'
21265 3' -56.1 NC_004778.3 + 61784 0.7 0.686536
Target:  5'- --gGCGCGCGCUGG-CUGcgCGGCGc -3'
miRNA:   3'- guaCGCGUGCGGCCuGGUuaGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 38440 0.7 0.696703
Target:  5'- --cGUGCGCGCUGGcgcagAUCAGccUCGACGUg -3'
miRNA:   3'- guaCGCGUGCGGCC-----UGGUU--AGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 116030 0.69 0.726836
Target:  5'- gAUGCGCACGUCG-AUUggUcCGGCGUg -3'
miRNA:   3'- gUACGCGUGCGGCcUGGuuA-GCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 29339 0.69 0.726836
Target:  5'- --gGCGCGCGCUGGggugcGCCAAgCGGCuGUa -3'
miRNA:   3'- guaCGCGUGCGGCC-----UGGUUaGCUG-CA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.