Results 1 - 20 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21265 | 3' | -56.1 | NC_004778.3 | + | 4368 | 0.67 | 0.837394 |
Target: 5'- gGUGCaauGCACGCC-GACCAgcAUCGuCGg -3' miRNA: 3'- gUACG---CGUGCGGcCUGGU--UAGCuGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 4964 | 0.68 | 0.784608 |
Target: 5'- uCAUGCGUGCGCCGcGacauuGCCAcgCG-CGUu -3' miRNA: 3'- -GUACGCGUGCGGC-C-----UGGUuaGCuGCA- -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 5739 | 0.7 | 0.686536 |
Target: 5'- -uUGCGUcaACGCCgcGGACC--UCGACGUu -3' miRNA: 3'- guACGCG--UGCGG--CCUGGuuAGCUGCA- -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 6555 | 0.67 | 0.811745 |
Target: 5'- --aGCGUACGgCGGGCCAGcaacgcguuuUaCGACGg -3' miRNA: 3'- guaCGCGUGCgGCCUGGUU----------A-GCUGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 9059 | 0.67 | 0.845575 |
Target: 5'- --cGCGCucgaGCGCCGGcUCAaugaguccGUCGACGg -3' miRNA: 3'- guaCGCG----UGCGGCCuGGU--------UAGCUGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 9436 | 0.71 | 0.624887 |
Target: 5'- --cGCGCACGuuGGACaCGGccgucgucUCGGCGg -3' miRNA: 3'- guaCGCGUGCggCCUG-GUU--------AGCUGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 10250 | 0.71 | 0.632103 |
Target: 5'- aGUGCGCagcgcgccgauugcGCGCgGGACCGG-CGGCGc -3' miRNA: 3'- gUACGCG--------------UGCGgCCUGGUUaGCUGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 10420 | 0.73 | 0.474822 |
Target: 5'- aAUGCGC-CGCCGGucccgcGCgCAAUCGGCGc -3' miRNA: 3'- gUACGCGuGCGGCC------UG-GUUAGCUGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 14529 | 0.66 | 0.883403 |
Target: 5'- gCGUGCGuCACGUCGuGCCGGaCGACc- -3' miRNA: 3'- -GUACGC-GUGCGGCcUGGUUaGCUGca -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 22001 | 0.66 | 0.868913 |
Target: 5'- --cGUGUACGCC-GACUugaaAAUCGGCGg -3' miRNA: 3'- guaCGCGUGCGGcCUGG----UUAGCUGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 26235 | 0.66 | 0.868913 |
Target: 5'- --aGCGCgauuauguacaGCGCCGuGGCCA--CGACGg -3' miRNA: 3'- guaCGCG-----------UGCGGC-CUGGUuaGCUGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 29339 | 0.69 | 0.726836 |
Target: 5'- --gGCGCGCGCUGGggugcGCCAAgCGGCuGUa -3' miRNA: 3'- guaCGCGUGCGGCC-----UGGUUaGCUG-CA- -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 29477 | 0.68 | 0.775273 |
Target: 5'- --aGCGCGCGCCGcGCCAccuUCGAa-- -3' miRNA: 3'- guaCGCGUGCGGCcUGGUu--AGCUgca -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 32271 | 0.73 | 0.493963 |
Target: 5'- --cGCGCACGCUGG-CCGG-CGGCGc -3' miRNA: 3'- guaCGCGUGCGGCCuGGUUaGCUGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 33147 | 0.72 | 0.563415 |
Target: 5'- gAUGCGCACGCggaaGGACgCAaacguacacacGUCGACGc -3' miRNA: 3'- gUACGCGUGCGg---CCUG-GU-----------UAGCUGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 34015 | 0.66 | 0.890311 |
Target: 5'- gAUGgGCGUGCCGGugaugcACCAgcgguuAUCGGCGUu -3' miRNA: 3'- gUACgCGUGCGGCC------UGGU------UAGCUGCA- -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 34884 | 0.71 | 0.624887 |
Target: 5'- uGUGCGCACGUCG-ACCucggcagCGGCGUu -3' miRNA: 3'- gUACGCGUGCGGCcUGGuua----GCUGCA- -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 35058 | 0.73 | 0.484347 |
Target: 5'- cCAUGCGCuugcgguauaACGCCGcuGCCGagGUCGACGUg -3' miRNA: 3'- -GUACGCG----------UGCGGCc-UGGU--UAGCUGCA- -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 36704 | 0.76 | 0.3607 |
Target: 5'- --cGCGCGCGCCGGuuCCAAaugCGGCGc -3' miRNA: 3'- guaCGCGUGCGGCCu-GGUUa--GCUGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 38440 | 0.7 | 0.696703 |
Target: 5'- --cGUGCGCGCUGGcgcagAUCAGccUCGACGUg -3' miRNA: 3'- guaCGCGUGCGGCC-----UGGUU--AGCUGCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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