miRNA display CGI


Results 41 - 53 of 53 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21265 3' -56.1 NC_004778.3 + 104514 0.69 0.736726
Target:  5'- --gGCGCGCGCCG-ACCgAGUC-ACGUa -3'
miRNA:   3'- guaCGCGUGCGGCcUGG-UUAGcUGCA- -5'
21265 3' -56.1 NC_004778.3 + 112351 0.67 0.85356
Target:  5'- cUAUGCGCgaggGCGCCGagaacgaaGugCAGUCGGCc- -3'
miRNA:   3'- -GUACGCG----UGCGGC--------CugGUUAGCUGca -5'
21265 3' -56.1 NC_004778.3 + 113890 0.67 0.829023
Target:  5'- --cGgGCGCGUCGGGCgAAggCGGCGc -3'
miRNA:   3'- guaCgCGUGCGGCCUGgUUa-GCUGCa -5'
21265 3' -56.1 NC_004778.3 + 115079 0.69 0.706814
Target:  5'- gGUGCGCACGCCGG-CUug-CGcuuuaGCGUc -3'
miRNA:   3'- gUACGCGUGCGGCCuGGuuaGC-----UGCA- -5'
21265 3' -56.1 NC_004778.3 + 115565 0.66 0.876268
Target:  5'- --aGCGCugGCCaaGGACCAGUUcaaGUa -3'
miRNA:   3'- guaCGCGugCGG--CCUGGUUAGcugCA- -5'
21265 3' -56.1 NC_004778.3 + 115646 0.73 0.513448
Target:  5'- aCGUGCuGCACGCCGGGCau-UUGGCu- -3'
miRNA:   3'- -GUACG-CGUGCGGCCUGguuAGCUGca -5'
21265 3' -56.1 NC_004778.3 + 116030 0.69 0.726836
Target:  5'- gAUGCGCACGUCG-AUUggUcCGGCGUg -3'
miRNA:   3'- gUACGCGUGCGGCcUGGuuA-GCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 116192 1.08 0.002879
Target:  5'- aCAUGCGCACGCCGGACCAAUCGACGUg -3'
miRNA:   3'- -GUACGCGUGCGGCCUGGUUAGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 117102 0.69 0.716861
Target:  5'- -uUGCgGCgACGCUGGGCC-GUCGACa- -3'
miRNA:   3'- guACG-CG-UGCGGCCUGGuUAGCUGca -5'
21265 3' -56.1 NC_004778.3 + 118889 0.67 0.829023
Target:  5'- uGUGCGCcgccGCGCCGaGGCCAAgCGcACa- -3'
miRNA:   3'- gUACGCG----UGCGGC-CUGGUUaGC-UGca -5'
21265 3' -56.1 NC_004778.3 + 118935 0.69 0.746525
Target:  5'- -uUGUGCGCGCCGG-CCGcgCcGCGc -3'
miRNA:   3'- guACGCGUGCGGCCuGGUuaGcUGCa -5'
21265 3' -56.1 NC_004778.3 + 119007 0.66 0.868913
Target:  5'- gCGUGCGCGCGCCGuGuCUGuUCcGCGa -3'
miRNA:   3'- -GUACGCGUGCGGC-CuGGUuAGcUGCa -5'
21265 3' -56.1 NC_004778.3 + 121689 0.69 0.710841
Target:  5'- gCGUGCGCuucacgugcaggcccGCGUCGGGCaCGuuGUCGGCGc -3'
miRNA:   3'- -GUACGCG---------------UGCGGCCUG-GU--UAGCUGCa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.