miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21265 3' -56.1 NC_004778.3 + 62418 0.67 0.811745
Target:  5'- --cGCGUACGCCGGcagcgaauuaaGCaCGAaCGACGg -3'
miRNA:   3'- guaCGCGUGCGGCC-----------UG-GUUaGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 61788 0.66 0.883403
Target:  5'- -cUGCGCGCGUCgcugguGGGCCAaccacaguGUUGugGUu -3'
miRNA:   3'- guACGCGUGCGG------CCUGGU--------UAGCugCA- -5'
21265 3' -56.1 NC_004778.3 + 61784 0.7 0.686536
Target:  5'- --gGCGCGCGCUGG-CUGcgCGGCGc -3'
miRNA:   3'- guaCGCGUGCGGCCuGGUuaGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 61664 0.74 0.465391
Target:  5'- --cGCGCAUGCUGGGCCAGcCGcCGa -3'
miRNA:   3'- guaCGCGUGCGGCCUGGUUaGCuGCa -5'
21265 3' -56.1 NC_004778.3 + 61164 0.67 0.829023
Target:  5'- --cGCuGCACGCCGGACgAAguaaagaaCGACa- -3'
miRNA:   3'- guaCG-CGUGCGGCCUGgUUa-------GCUGca -5'
21265 3' -56.1 NC_004778.3 + 60149 0.72 0.583784
Target:  5'- --gGUGCugGCCGG-CgAAUCGugGUu -3'
miRNA:   3'- guaCGCGugCGGCCuGgUUAGCugCA- -5'
21265 3' -56.1 NC_004778.3 + 58297 0.68 0.784608
Target:  5'- gGUG-GCGCGCUGGGCUuugcaggcGUCGGCGc -3'
miRNA:   3'- gUACgCGUGCGGCCUGGu-------UAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 56962 0.71 0.598129
Target:  5'- aCGUGUGCcgcggcgugaacacgGCGCUGGACCugugCGGCGg -3'
miRNA:   3'- -GUACGCG---------------UGCGGCCUGGuua-GCUGCa -5'
21265 3' -56.1 NC_004778.3 + 51208 0.7 0.693658
Target:  5'- aUAUGCGCAUGCCuGACCAacuuaauacuuugcGagGACGg -3'
miRNA:   3'- -GUACGCGUGCGGcCUGGU--------------UagCUGCa -5'
21265 3' -56.1 NC_004778.3 + 49533 0.68 0.756222
Target:  5'- --gGCGCugGCCGGccCCAAcuaccUCGACu- -3'
miRNA:   3'- guaCGCGugCGGCCu-GGUU-----AGCUGca -5'
21265 3' -56.1 NC_004778.3 + 47406 0.69 0.706814
Target:  5'- --cGCGCGCGCgUGGACCAcgCGcCa- -3'
miRNA:   3'- guaCGCGUGCG-GCCUGGUuaGCuGca -5'
21265 3' -56.1 NC_004778.3 + 43288 0.67 0.845575
Target:  5'- aCGUGCgGCGCGCCGcGGCgCcGUCGAa-- -3'
miRNA:   3'- -GUACG-CGUGCGGC-CUG-GuUAGCUgca -5'
21265 3' -56.1 NC_004778.3 + 39767 0.66 0.883403
Target:  5'- --gGUGCcCGCCGGACUGuccgUGGCGg -3'
miRNA:   3'- guaCGCGuGCGGCCUGGUua--GCUGCa -5'
21265 3' -56.1 NC_004778.3 + 38440 0.7 0.696703
Target:  5'- --cGUGCGCGCUGGcgcagAUCAGccUCGACGUg -3'
miRNA:   3'- guaCGCGUGCGGCC-----UGGUU--AGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 36704 0.76 0.3607
Target:  5'- --cGCGCGCGCCGGuuCCAAaugCGGCGc -3'
miRNA:   3'- guaCGCGUGCGGCCu-GGUUa--GCUGCa -5'
21265 3' -56.1 NC_004778.3 + 35058 0.73 0.484347
Target:  5'- cCAUGCGCuugcgguauaACGCCGcuGCCGagGUCGACGUg -3'
miRNA:   3'- -GUACGCG----------UGCGGCc-UGGU--UAGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 34884 0.71 0.624887
Target:  5'- uGUGCGCACGUCG-ACCucggcagCGGCGUu -3'
miRNA:   3'- gUACGCGUGCGGCcUGGuua----GCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 34015 0.66 0.890311
Target:  5'- gAUGgGCGUGCCGGugaugcACCAgcgguuAUCGGCGUu -3'
miRNA:   3'- gUACgCGUGCGGCC------UGGU------UAGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 33147 0.72 0.563415
Target:  5'- gAUGCGCACGCggaaGGACgCAaacguacacacGUCGACGc -3'
miRNA:   3'- gUACGCGUGCGg---CCUG-GU-----------UAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 32271 0.73 0.493963
Target:  5'- --cGCGCACGCUGG-CCGG-CGGCGc -3'
miRNA:   3'- guaCGCGUGCGGCCuGGUUaGCUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.