miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21265 3' -56.1 NC_004778.3 + 95013 0.66 0.861341
Target:  5'- cCGUGCGCcgacgggcagguGCGCCuGGACCAcccCGGCc- -3'
miRNA:   3'- -GUACGCG------------UGCGG-CCUGGUua-GCUGca -5'
21265 3' -56.1 NC_004778.3 + 116030 0.69 0.726836
Target:  5'- gAUGCGCACGUCG-AUUggUcCGGCGUg -3'
miRNA:   3'- gUACGCGUGCGGCcUGGuuA-GCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 73314 0.68 0.756222
Target:  5'- --cGCGCACGaCC--GCCAAuuUCGACGUa -3'
miRNA:   3'- guaCGCGUGC-GGccUGGUU--AGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 4964 0.68 0.784608
Target:  5'- uCAUGCGUGCGCCGcGacauuGCCAcgCG-CGUu -3'
miRNA:   3'- -GUACGCGUGCGGC-C-----UGGUuaGCuGCA- -5'
21265 3' -56.1 NC_004778.3 + 62418 0.67 0.811745
Target:  5'- --cGCGUACGCCGGcagcgaauuaaGCaCGAaCGACGg -3'
miRNA:   3'- guaCGCGUGCGGCC-----------UG-GUUaGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 113890 0.67 0.829023
Target:  5'- --cGgGCGCGUCGGGCgAAggCGGCGc -3'
miRNA:   3'- guaCgCGUGCGGCCUGgUUa-GCUGCa -5'
21265 3' -56.1 NC_004778.3 + 4368 0.67 0.837394
Target:  5'- gGUGCaauGCACGCC-GACCAgcAUCGuCGg -3'
miRNA:   3'- gUACG---CGUGCGGcCUGGU--UAGCuGCa -5'
21265 3' -56.1 NC_004778.3 + 9059 0.67 0.845575
Target:  5'- --cGCGCucgaGCGCCGGcUCAaugaguccGUCGACGg -3'
miRNA:   3'- guaCGCG----UGCGGCCuGGU--------UAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 77369 0.66 0.861341
Target:  5'- --cGcCGCGCGCUGGugCAAUgCGcACGc -3'
miRNA:   3'- guaC-GCGUGCGGCCugGUUA-GC-UGCa -5'
21265 3' -56.1 NC_004778.3 + 29339 0.69 0.726836
Target:  5'- --gGCGCGCGCUGGggugcGCCAAgCGGCuGUa -3'
miRNA:   3'- guaCGCGUGCGGCC-----UGGUUaGCUG-CA- -5'
21265 3' -56.1 NC_004778.3 + 121689 0.69 0.710841
Target:  5'- gCGUGCGCuucacgugcaggcccGCGUCGGGCaCGuuGUCGGCGc -3'
miRNA:   3'- -GUACGCG---------------UGCGGCCUG-GU--UAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 47406 0.69 0.706814
Target:  5'- --cGCGCGCGCgUGGACCAcgCGcCa- -3'
miRNA:   3'- guaCGCGUGCG-GCCUGGUuaGCuGca -5'
21265 3' -56.1 NC_004778.3 + 32271 0.73 0.493963
Target:  5'- --cGCGCACGCUGG-CCGG-CGGCGc -3'
miRNA:   3'- guaCGCGUGCGGCCuGGUUaGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 60149 0.72 0.583784
Target:  5'- --gGUGCugGCCGG-CgAAUCGugGUu -3'
miRNA:   3'- guaCGCGugCGGCCuGgUUAGCugCA- -5'
21265 3' -56.1 NC_004778.3 + 90647 0.71 0.594024
Target:  5'- -uUGCGCACGCCGucaacgucaGCgCGGUCGACGc -3'
miRNA:   3'- guACGCGUGCGGCc--------UG-GUUAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 56962 0.71 0.598129
Target:  5'- aCGUGUGCcgcggcgugaacacgGCGCUGGACCugugCGGCGg -3'
miRNA:   3'- -GUACGCG---------------UGCGGCCUGGuua-GCUGCa -5'
21265 3' -56.1 NC_004778.3 + 34884 0.71 0.624887
Target:  5'- uGUGCGCACGUCG-ACCucggcagCGGCGUu -3'
miRNA:   3'- gUACGCGUGCGGCcUGGuua----GCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 9436 0.71 0.624887
Target:  5'- --cGCGCACGuuGGACaCGGccgucgucUCGGCGg -3'
miRNA:   3'- guaCGCGUGCggCCUG-GUU--------AGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 10250 0.71 0.632103
Target:  5'- aGUGCGCagcgcgccgauugcGCGCgGGACCGG-CGGCGc -3'
miRNA:   3'- gUACGCG--------------UGCGgCCUGGUUaGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 5739 0.7 0.686536
Target:  5'- -uUGCGUcaACGCCgcGGACC--UCGACGUu -3'
miRNA:   3'- guACGCG--UGCGG--CCUGGuuAGCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.