miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21265 3' -56.1 NC_004778.3 + 9436 0.71 0.624887
Target:  5'- --cGCGCACGuuGGACaCGGccgucgucUCGGCGg -3'
miRNA:   3'- guaCGCGUGCggCCUG-GUU--------AGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 10250 0.71 0.632103
Target:  5'- aGUGCGCagcgcgccgauugcGCGCgGGACCGG-CGGCGc -3'
miRNA:   3'- gUACGCG--------------UGCGgCCUGGUUaGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 5739 0.7 0.686536
Target:  5'- -uUGCGUcaACGCCgcGGACC--UCGACGUu -3'
miRNA:   3'- guACGCG--UGCGG--CCUGGuuAGCUGCA- -5'
21265 3' -56.1 NC_004778.3 + 47406 0.69 0.706814
Target:  5'- --cGCGCGCGCgUGGACCAcgCGcCa- -3'
miRNA:   3'- guaCGCGUGCG-GCCUGGUuaGCuGca -5'
21265 3' -56.1 NC_004778.3 + 121689 0.69 0.710841
Target:  5'- gCGUGCGCuucacgugcaggcccGCGUCGGGCaCGuuGUCGGCGc -3'
miRNA:   3'- -GUACGCG---------------UGCGGCCUG-GU--UAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 61164 0.67 0.829023
Target:  5'- --cGCuGCACGCCGGACgAAguaaagaaCGACa- -3'
miRNA:   3'- guaCG-CGUGCGGCCUGgUUa-------GCUGca -5'
21265 3' -56.1 NC_004778.3 + 118889 0.67 0.829023
Target:  5'- uGUGCGCcgccGCGCCGaGGCCAAgCGcACa- -3'
miRNA:   3'- gUACGCG----UGCGGC-CUGGUUaGC-UGca -5'
21265 3' -56.1 NC_004778.3 + 6555 0.67 0.811745
Target:  5'- --aGCGUACGgCGGGCCAGcaacgcguuuUaCGACGg -3'
miRNA:   3'- guaCGCGUGCgGCCUGGUU----------A-GCUGCa -5'
21265 3' -56.1 NC_004778.3 + 58297 0.68 0.784608
Target:  5'- gGUG-GCGCGCUGGGCUuugcaggcGUCGGCGc -3'
miRNA:   3'- gUACgCGUGCGGCCUGGu-------UAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 29477 0.68 0.775273
Target:  5'- --aGCGCGCGCCGcGCCAccuUCGAa-- -3'
miRNA:   3'- guaCGCGUGCGGCcUGGUu--AGCUgca -5'
21265 3' -56.1 NC_004778.3 + 49533 0.68 0.756222
Target:  5'- --gGCGCugGCCGGccCCAAcuaccUCGACu- -3'
miRNA:   3'- guaCGCGugCGGCCu-GGUU-----AGCUGca -5'
21265 3' -56.1 NC_004778.3 + 69618 0.67 0.837394
Target:  5'- gCGUGuCGuCGCGCCGGucaACCAAccacugcauuuUCGGCGc -3'
miRNA:   3'- -GUAC-GC-GUGCGGCC---UGGUU-----------AGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 43288 0.67 0.845575
Target:  5'- aCGUGCgGCGCGCCGcGGCgCcGUCGAa-- -3'
miRNA:   3'- -GUACG-CGUGCGGC-CUG-GuUAGCUgca -5'
21265 3' -56.1 NC_004778.3 + 112351 0.67 0.85356
Target:  5'- cUAUGCGCgaggGCGCCGagaacgaaGugCAGUCGGCc- -3'
miRNA:   3'- -GUACGCG----UGCGGC--------CugGUUAGCUGca -5'
21265 3' -56.1 NC_004778.3 + 26235 0.66 0.868913
Target:  5'- --aGCGCgauuauguacaGCGCCGuGGCCA--CGACGg -3'
miRNA:   3'- guaCGCG-----------UGCGGC-CUGGUuaGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 119007 0.66 0.868913
Target:  5'- gCGUGCGCGCGCCGuGuCUGuUCcGCGa -3'
miRNA:   3'- -GUACGCGUGCGGC-CuGGUuAGcUGCa -5'
21265 3' -56.1 NC_004778.3 + 22001 0.66 0.868913
Target:  5'- --cGUGUACGCC-GACUugaaAAUCGGCGg -3'
miRNA:   3'- guaCGCGUGCGGcCUGG----UUAGCUGCa -5'
21265 3' -56.1 NC_004778.3 + 82554 0.66 0.883403
Target:  5'- -uUGCGCACgcuucuagaaauGCCGG-CCAcucccAUCGACa- -3'
miRNA:   3'- guACGCGUG------------CGGCCuGGU-----UAGCUGca -5'
21265 3' -56.1 NC_004778.3 + 39767 0.66 0.883403
Target:  5'- --gGUGCcCGCCGGACUGuccgUGGCGg -3'
miRNA:   3'- guaCGCGuGCGGCCUGGUua--GCUGCa -5'
21265 3' -56.1 NC_004778.3 + 116192 1.08 0.002879
Target:  5'- aCAUGCGCACGCCGGACCAAUCGACGUg -3'
miRNA:   3'- -GUACGCGUGCGGCCUGGUUAGCUGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.