Results 41 - 53 of 53 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21265 | 3' | -56.1 | NC_004778.3 | + | 116030 | 0.69 | 0.726836 |
Target: 5'- gAUGCGCACGUCG-AUUggUcCGGCGUg -3' miRNA: 3'- gUACGCGUGCGGCcUGGuuA-GCUGCA- -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 61788 | 0.66 | 0.883403 |
Target: 5'- -cUGCGCGCGUCgcugguGGGCCAaccacaguGUUGugGUu -3' miRNA: 3'- guACGCGUGCGG------CCUGGU--------UAGCugCA- -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 115565 | 0.66 | 0.876268 |
Target: 5'- --aGCGCugGCCaaGGACCAGUUcaaGUa -3' miRNA: 3'- guaCGCGugCGG--CCUGGUUAGcugCA- -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 92861 | 0.66 | 0.868165 |
Target: 5'- --cGUGCACGCUucGGCCGAgaacggcUCGGCGUc -3' miRNA: 3'- guaCGCGUGCGGc-CUGGUU-------AGCUGCA- -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 77369 | 0.66 | 0.861341 |
Target: 5'- --cGcCGCGCGCUGGugCAAUgCGcACGc -3' miRNA: 3'- guaC-GCGUGCGGCCugGUUA-GC-UGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 95013 | 0.66 | 0.861341 |
Target: 5'- cCGUGCGCcgacgggcagguGCGCCuGGACCAcccCGGCc- -3' miRNA: 3'- -GUACGCG------------UGCGG-CCUGGUua-GCUGca -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 9059 | 0.67 | 0.845575 |
Target: 5'- --cGCGCucgaGCGCCGGcUCAaugaguccGUCGACGg -3' miRNA: 3'- guaCGCG----UGCGGCCuGGU--------UAGCUGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 4368 | 0.67 | 0.837394 |
Target: 5'- gGUGCaauGCACGCC-GACCAgcAUCGuCGg -3' miRNA: 3'- gUACG---CGUGCGGcCUGGU--UAGCuGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 113890 | 0.67 | 0.829023 |
Target: 5'- --cGgGCGCGUCGGGCgAAggCGGCGc -3' miRNA: 3'- guaCgCGUGCGGCCUGgUUa-GCUGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 62418 | 0.67 | 0.811745 |
Target: 5'- --cGCGUACGCCGGcagcgaauuaaGCaCGAaCGACGg -3' miRNA: 3'- guaCGCGUGCGGCC-----------UG-GUUaGCUGCa -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 4964 | 0.68 | 0.784608 |
Target: 5'- uCAUGCGUGCGCCGcGacauuGCCAcgCG-CGUu -3' miRNA: 3'- -GUACGCGUGCGGC-C-----UGGUuaGCuGCA- -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 73314 | 0.68 | 0.756222 |
Target: 5'- --cGCGCACGaCC--GCCAAuuUCGACGUa -3' miRNA: 3'- guaCGCGUGC-GGccUGGUU--AGCUGCA- -5' |
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21265 | 3' | -56.1 | NC_004778.3 | + | 61664 | 0.74 | 0.465391 |
Target: 5'- --cGCGCAUGCUGGGCCAGcCGcCGa -3' miRNA: 3'- guaCGCGUGCGGCCUGGUUaGCuGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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