miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21265 5' -59.1 NC_004778.3 + 73522 0.66 0.711431
Target:  5'- -cACGCGcAAUUCGGCGGCGCagcaGCUu -3'
miRNA:   3'- uuUGUGU-UUGGGCCGCCGCGgg--CGAu -5'
21265 5' -59.1 NC_004778.3 + 93394 0.66 0.701327
Target:  5'- gAGAgGCAGAUCgCGGCgauGGCGCC-GCUGa -3'
miRNA:   3'- -UUUgUGUUUGG-GCCG---CCGCGGgCGAU- -5'
21265 5' -59.1 NC_004778.3 + 9445 0.66 0.691162
Target:  5'- uGGACACGGccgucguCUCGGCGGCGCa-GCUc -3'
miRNA:   3'- -UUUGUGUUu------GGGCCGCCGCGggCGAu -5'
21265 5' -59.1 NC_004778.3 + 1670 0.66 0.691162
Target:  5'- uAugGCcGACCuCGGCaGCGCcCCGCg- -3'
miRNA:   3'- uUugUGuUUGG-GCCGcCGCG-GGCGau -5'
21265 5' -59.1 NC_004778.3 + 95168 0.66 0.691162
Target:  5'- cAGGCGCAccuGCCCGuCGGCGCaCgGCg- -3'
miRNA:   3'- -UUUGUGUu--UGGGCcGCCGCG-GgCGau -5'
21265 5' -59.1 NC_004778.3 + 104345 0.66 0.685039
Target:  5'- cAACACGuuggccggcguacguGACUCGGuCGGCGCgCGCc- -3'
miRNA:   3'- uUUGUGU---------------UUGGGCC-GCCGCGgGCGau -5'
21265 5' -59.1 NC_004778.3 + 25241 0.66 0.680948
Target:  5'- --uCGCGAGCCgGGuCGuCGCCCGCc- -3'
miRNA:   3'- uuuGUGUUUGGgCC-GCcGCGGGCGau -5'
21265 5' -59.1 NC_004778.3 + 47135 0.66 0.680948
Target:  5'- -cGCACAAGCgcgUCGGCGugaGCGCCgGCg- -3'
miRNA:   3'- uuUGUGUUUG---GGCCGC---CGCGGgCGau -5'
21265 5' -59.1 NC_004778.3 + 46906 0.66 0.680948
Target:  5'- uGGCACGuacGCgCUGGCcGCuGCCCGCUAc -3'
miRNA:   3'- uUUGUGUu--UG-GGCCGcCG-CGGGCGAU- -5'
21265 5' -59.1 NC_004778.3 + 2200 0.66 0.670693
Target:  5'- gGAACGCGGcUgCGGUGGCGgCCGaCUAc -3'
miRNA:   3'- -UUUGUGUUuGgGCCGCCGCgGGC-GAU- -5'
21265 5' -59.1 NC_004778.3 + 38139 0.66 0.66761
Target:  5'- gAAGCGCAGGCCC-GCuGCGCCgcucgacaccuccaCGCUAc -3'
miRNA:   3'- -UUUGUGUUUGGGcCGcCGCGG--------------GCGAU- -5'
21265 5' -59.1 NC_004778.3 + 98132 0.67 0.660406
Target:  5'- aAGGgGCGAucGCCCGGC-GCGCUCGUUc -3'
miRNA:   3'- -UUUgUGUU--UGGGCCGcCGCGGGCGAu -5'
21265 5' -59.1 NC_004778.3 + 29238 0.67 0.660406
Target:  5'- --cCGCuccGCCgaGGCGGCGCCCGa-- -3'
miRNA:   3'- uuuGUGuu-UGGg-CCGCCGCGGGCgau -5'
21265 5' -59.1 NC_004778.3 + 17053 0.67 0.660406
Target:  5'- -uGCGC-AACUCGGCGG-GCCUGUUu -3'
miRNA:   3'- uuUGUGuUUGGGCCGCCgCGGGCGAu -5'
21265 5' -59.1 NC_004778.3 + 14701 0.67 0.650096
Target:  5'- cAACACGGACgCGGCguuugcauucgaGGUGCCCGg-- -3'
miRNA:   3'- uUUGUGUUUGgGCCG------------CCGCGGGCgau -5'
21265 5' -59.1 NC_004778.3 + 47738 0.67 0.639771
Target:  5'- uGGCGCAAGCCUuGUGGCGCauacaCGCc- -3'
miRNA:   3'- uUUGUGUUUGGGcCGCCGCGg----GCGau -5'
21265 5' -59.1 NC_004778.3 + 45769 0.67 0.639771
Target:  5'- aAGACgACGAG-CUGGUGGUGUCCGCg- -3'
miRNA:   3'- -UUUG-UGUUUgGGCCGCCGCGGGCGau -5'
21265 5' -59.1 NC_004778.3 + 39806 0.67 0.62944
Target:  5'- aAAACGCAAugCCGGUGuuccgauacaGCUCGCUGg -3'
miRNA:   3'- -UUUGUGUUugGGCCGCcg--------CGGGCGAU- -5'
21265 5' -59.1 NC_004778.3 + 118800 0.67 0.628407
Target:  5'- -cGCACAAuuacgagGCCCaGCGGCGCCgUGUa- -3'
miRNA:   3'- uuUGUGUU-------UGGGcCGCCGCGG-GCGau -5'
21265 5' -59.1 NC_004778.3 + 99073 0.67 0.619111
Target:  5'- gAAugAC-GACCCGGC-GCGUCCGUa- -3'
miRNA:   3'- -UUugUGuUUGGGCCGcCGCGGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.