Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21265 | 5' | -59.1 | NC_004778.3 | + | 9445 | 0.66 | 0.691162 |
Target: 5'- uGGACACGGccgucguCUCGGCGGCGCa-GCUc -3' miRNA: 3'- -UUUGUGUUu------GGGCCGCCGCGggCGAu -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 25241 | 0.66 | 0.680948 |
Target: 5'- --uCGCGAGCCgGGuCGuCGCCCGCc- -3' miRNA: 3'- uuuGUGUUUGGgCC-GCcGCGGGCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 38139 | 0.66 | 0.66761 |
Target: 5'- gAAGCGCAGGCCC-GCuGCGCCgcucgacaccuccaCGCUAc -3' miRNA: 3'- -UUUGUGUUUGGGcCGcCGCGG--------------GCGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 104345 | 0.66 | 0.685039 |
Target: 5'- cAACACGuuggccggcguacguGACUCGGuCGGCGCgCGCc- -3' miRNA: 3'- uUUGUGU---------------UUGGGCC-GCCGCGgGCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 2200 | 0.66 | 0.670693 |
Target: 5'- gGAACGCGGcUgCGGUGGCGgCCGaCUAc -3' miRNA: 3'- -UUUGUGUUuGgGCCGCCGCgGGC-GAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 47135 | 0.66 | 0.680948 |
Target: 5'- -cGCACAAGCgcgUCGGCGugaGCGCCgGCg- -3' miRNA: 3'- uuUGUGUUUG---GGCCGC---CGCGGgCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 46906 | 0.66 | 0.680948 |
Target: 5'- uGGCACGuacGCgCUGGCcGCuGCCCGCUAc -3' miRNA: 3'- uUUGUGUu--UG-GGCCGcCG-CGGGCGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 95168 | 0.66 | 0.691162 |
Target: 5'- cAGGCGCAccuGCCCGuCGGCGCaCgGCg- -3' miRNA: 3'- -UUUGUGUu--UGGGCcGCCGCG-GgCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 73522 | 0.66 | 0.711431 |
Target: 5'- -cACGCGcAAUUCGGCGGCGCagcaGCUu -3' miRNA: 3'- uuUGUGU-UUGGGCCGCCGCGgg--CGAu -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 1670 | 0.66 | 0.691162 |
Target: 5'- uAugGCcGACCuCGGCaGCGCcCCGCg- -3' miRNA: 3'- uUugUGuUUGG-GCCGcCGCG-GGCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 93394 | 0.66 | 0.701327 |
Target: 5'- gAGAgGCAGAUCgCGGCgauGGCGCC-GCUGa -3' miRNA: 3'- -UUUgUGUUUGG-GCCG---CCGCGGgCGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 98132 | 0.67 | 0.660406 |
Target: 5'- aAGGgGCGAucGCCCGGC-GCGCUCGUUc -3' miRNA: 3'- -UUUgUGUU--UGGGCCGcCGCGGGCGAu -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 17053 | 0.67 | 0.660406 |
Target: 5'- -uGCGC-AACUCGGCGG-GCCUGUUu -3' miRNA: 3'- uuUGUGuUUGGGCCGCCgCGGGCGAu -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 14701 | 0.67 | 0.650096 |
Target: 5'- cAACACGGACgCGGCguuugcauucgaGGUGCCCGg-- -3' miRNA: 3'- uUUGUGUUUGgGCCG------------CCGCGGGCgau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 45769 | 0.67 | 0.639771 |
Target: 5'- aAGACgACGAG-CUGGUGGUGUCCGCg- -3' miRNA: 3'- -UUUG-UGUUUgGGCCGCCGCGGGCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 47738 | 0.67 | 0.639771 |
Target: 5'- uGGCGCAAGCCUuGUGGCGCauacaCGCc- -3' miRNA: 3'- uUUGUGUUUGGGcCGCCGCGg----GCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 118800 | 0.67 | 0.628407 |
Target: 5'- -cGCACAAuuacgagGCCCaGCGGCGCCgUGUa- -3' miRNA: 3'- uuUGUGUU-------UGGGcCGCCGCGG-GCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 83268 | 0.67 | 0.608792 |
Target: 5'- cAGACGCGcggaacGGCgCGGCGGCuCCgCGCUAu -3' miRNA: 3'- -UUUGUGU------UUGgGCCGCCGcGG-GCGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 39806 | 0.67 | 0.62944 |
Target: 5'- aAAACGCAAugCCGGUGuuccgauacaGCUCGCUGg -3' miRNA: 3'- -UUUGUGUUugGGCCGCcg--------CGGGCGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 29238 | 0.67 | 0.660406 |
Target: 5'- --cCGCuccGCCgaGGCGGCGCCCGa-- -3' miRNA: 3'- uuuGUGuu-UGGg-CCGCCGCGGGCgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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