miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21265 5' -59.1 NC_004778.3 + 116156 1.04 0.002056
Target:  5'- cAAACACAAACCCGGCGGCGCCCGCUAa -3'
miRNA:   3'- -UUUGUGUUUGGGCCGCCGCGGGCGAU- -5'
21265 5' -59.1 NC_004778.3 + 38467 0.77 0.172491
Target:  5'- -cGCGCGAACCCGGCgugauucaGGCGCaaauCCGCUAa -3'
miRNA:   3'- uuUGUGUUUGGGCCG--------CCGCG----GGCGAU- -5'
21265 5' -59.1 NC_004778.3 + 101352 0.77 0.181034
Target:  5'- aGAACaACAAGCCCGGaCGGCGCCaggacaagaccguCGCUGc -3'
miRNA:   3'- -UUUG-UGUUUGGGCC-GCCGCGG-------------GCGAU- -5'
21265 5' -59.1 NC_004778.3 + 114927 0.75 0.238729
Target:  5'- aAAGCGCAAG-CCGGCGuGCGCaCCGCg- -3'
miRNA:   3'- -UUUGUGUUUgGGCCGC-CGCG-GGCGau -5'
21265 5' -59.1 NC_004778.3 + 7860 0.74 0.26302
Target:  5'- cAGCAUAAGCgCGGUGGCGCCCa--- -3'
miRNA:   3'- uUUGUGUUUGgGCCGCCGCGGGcgau -5'
21265 5' -59.1 NC_004778.3 + 127080 0.72 0.340096
Target:  5'- -uGCAC--GCCCGGCGaGUGCUCGCg- -3'
miRNA:   3'- uuUGUGuuUGGGCCGC-CGCGGGCGau -5'
21265 5' -59.1 NC_004778.3 + 43310 0.71 0.42241
Target:  5'- -uGCAcCAAACCCGcguucaaaaacguGCGGCGCgCCGCg- -3'
miRNA:   3'- uuUGU-GUUUGGGC-------------CGCCGCG-GGCGau -5'
21265 5' -59.1 NC_004778.3 + 53293 0.71 0.380179
Target:  5'- -uGCACuAACgCCGGCGGCGgUUGCUGu -3'
miRNA:   3'- uuUGUGuUUG-GGCCGCCGCgGGCGAU- -5'
21265 5' -59.1 NC_004778.3 + 45493 0.7 0.459832
Target:  5'- gGAACACAuugucAACaCCGGCGGCGagCGCa- -3'
miRNA:   3'- -UUUGUGU-----UUG-GGCCGCCGCggGCGau -5'
21265 5' -59.1 NC_004778.3 + 90717 0.7 0.469225
Target:  5'- cGGCGCugcGCUCGGCGGCGagCGCUGc -3'
miRNA:   3'- uUUGUGuu-UGGGCCGCCGCggGCGAU- -5'
21265 5' -59.1 NC_004778.3 + 96590 0.69 0.537459
Target:  5'- gGAGCACccugcuAGCCaGcGCGGCGgCCGCUAg -3'
miRNA:   3'- -UUUGUGu-----UUGGgC-CGCCGCgGGCGAU- -5'
21265 5' -59.1 NC_004778.3 + 10270 0.69 0.527476
Target:  5'- -cGCGCGGGaCCGGCGGCGCaUUGCa- -3'
miRNA:   3'- uuUGUGUUUgGGCCGCCGCG-GGCGau -5'
21265 5' -59.1 NC_004778.3 + 43889 0.68 0.567769
Target:  5'- uGGACACAugauguguCCCGGCgcGGCGCCCcCg- -3'
miRNA:   3'- -UUUGUGUuu------GGGCCG--CCGCGGGcGau -5'
21265 5' -59.1 NC_004778.3 + 39116 0.68 0.577972
Target:  5'- uGAACGCAAguacgugguGCgCGGCGGCGaCCaCGCc- -3'
miRNA:   3'- -UUUGUGUU---------UGgGCCGCCGC-GG-GCGau -5'
21265 5' -59.1 NC_004778.3 + 34153 0.68 0.598492
Target:  5'- cGACGCGGuCgCCGGCGGCGaCaaGCUGc -3'
miRNA:   3'- uUUGUGUUuG-GGCCGCCGC-GggCGAU- -5'
21265 5' -59.1 NC_004778.3 + 120949 0.68 0.588216
Target:  5'- uAAUACGAugaCUGGCGgggcgcgggccGCGCCCGCUGc -3'
miRNA:   3'- uUUGUGUUug-GGCCGC-----------CGCGGGCGAU- -5'
21265 5' -59.1 NC_004778.3 + 32271 0.68 0.588216
Target:  5'- -cGCGCAcgcuGgCCGGCGGCGCCgugucggGCUGg -3'
miRNA:   3'- uuUGUGUu---UgGGCCGCCGCGGg------CGAU- -5'
21265 5' -59.1 NC_004778.3 + 93220 0.68 0.577972
Target:  5'- gAAACGCAAACUCcaucaGCGGCGCCauCGCc- -3'
miRNA:   3'- -UUUGUGUUUGGGc----CGCCGCGG--GCGau -5'
21265 5' -59.1 NC_004778.3 + 84453 0.68 0.567769
Target:  5'- aAAGCGCAcguGCUCGaaGCGGUGCCCcuGCUGg -3'
miRNA:   3'- -UUUGUGUu--UGGGC--CGCCGCGGG--CGAU- -5'
21265 5' -59.1 NC_004778.3 + 100259 0.68 0.567769
Target:  5'- --uCACGGGCCCGGCagcuGUGCCUGUg- -3'
miRNA:   3'- uuuGUGUUUGGGCCGc---CGCGGGCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.