miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21265 5' -59.1 NC_004778.3 + 47135 0.66 0.680948
Target:  5'- -cGCACAAGCgcgUCGGCGugaGCGCCgGCg- -3'
miRNA:   3'- uuUGUGUUUG---GGCCGC---CGCGGgCGau -5'
21265 5' -59.1 NC_004778.3 + 47738 0.67 0.639771
Target:  5'- uGGCGCAAGCCUuGUGGCGCauacaCGCc- -3'
miRNA:   3'- uUUGUGUUUGGGcCGCCGCGg----GCGau -5'
21265 5' -59.1 NC_004778.3 + 49992 0.68 0.598492
Target:  5'- cAAGCGC--GCCCGuGCGGgGCCCaguGCUu -3'
miRNA:   3'- -UUUGUGuuUGGGC-CGCCgCGGG---CGAu -5'
21265 5' -59.1 NC_004778.3 + 53293 0.71 0.380179
Target:  5'- -uGCACuAACgCCGGCGGCGgUUGCUGu -3'
miRNA:   3'- uuUGUGuUUG-GGCCGCCGCgGGCGAU- -5'
21265 5' -59.1 NC_004778.3 + 73522 0.66 0.711431
Target:  5'- -cACGCGcAAUUCGGCGGCGCagcaGCUu -3'
miRNA:   3'- uuUGUGU-UUGGGCCGCCGCGgg--CGAu -5'
21265 5' -59.1 NC_004778.3 + 83268 0.67 0.608792
Target:  5'- cAGACGCGcggaacGGCgCGGCGGCuCCgCGCUAu -3'
miRNA:   3'- -UUUGUGU------UUGgGCCGCCGcGG-GCGAU- -5'
21265 5' -59.1 NC_004778.3 + 84453 0.68 0.567769
Target:  5'- aAAGCGCAcguGCUCGaaGCGGUGCCCcuGCUGg -3'
miRNA:   3'- -UUUGUGUu--UGGGC--CGCCGCGGG--CGAU- -5'
21265 5' -59.1 NC_004778.3 + 90717 0.7 0.469225
Target:  5'- cGGCGCugcGCUCGGCGGCGagCGCUGc -3'
miRNA:   3'- uUUGUGuu-UGGGCCGCCGCggGCGAU- -5'
21265 5' -59.1 NC_004778.3 + 93220 0.68 0.577972
Target:  5'- gAAACGCAAACUCcaucaGCGGCGCCauCGCc- -3'
miRNA:   3'- -UUUGUGUUUGGGc----CGCCGCGG--GCGau -5'
21265 5' -59.1 NC_004778.3 + 93394 0.66 0.701327
Target:  5'- gAGAgGCAGAUCgCGGCgauGGCGCC-GCUGa -3'
miRNA:   3'- -UUUgUGUUUGG-GCCG---CCGCGGgCGAU- -5'
21265 5' -59.1 NC_004778.3 + 95168 0.66 0.691162
Target:  5'- cAGGCGCAccuGCCCGuCGGCGCaCgGCg- -3'
miRNA:   3'- -UUUGUGUu--UGGGCcGCCGCG-GgCGau -5'
21265 5' -59.1 NC_004778.3 + 96590 0.69 0.537459
Target:  5'- gGAGCACccugcuAGCCaGcGCGGCGgCCGCUAg -3'
miRNA:   3'- -UUUGUGu-----UUGGgC-CGCCGCgGGCGAU- -5'
21265 5' -59.1 NC_004778.3 + 98132 0.67 0.660406
Target:  5'- aAGGgGCGAucGCCCGGC-GCGCUCGUUc -3'
miRNA:   3'- -UUUgUGUU--UGGGCCGcCGCGGGCGAu -5'
21265 5' -59.1 NC_004778.3 + 99073 0.67 0.619111
Target:  5'- gAAugAC-GACCCGGC-GCGUCCGUa- -3'
miRNA:   3'- -UUugUGuUUGGGCCGcCGCGGGCGau -5'
21265 5' -59.1 NC_004778.3 + 100259 0.68 0.567769
Target:  5'- --uCACGGGCCCGGCagcuGUGCCUGUg- -3'
miRNA:   3'- uuuGUGUUUGGGCCGc---CGCGGGCGau -5'
21265 5' -59.1 NC_004778.3 + 101352 0.77 0.181034
Target:  5'- aGAACaACAAGCCCGGaCGGCGCCaggacaagaccguCGCUGc -3'
miRNA:   3'- -UUUG-UGUUUGGGCC-GCCGCGG-------------GCGAU- -5'
21265 5' -59.1 NC_004778.3 + 104345 0.66 0.685039
Target:  5'- cAACACGuuggccggcguacguGACUCGGuCGGCGCgCGCc- -3'
miRNA:   3'- uUUGUGU---------------UUGGGCC-GCCGCGgGCGau -5'
21265 5' -59.1 NC_004778.3 + 114927 0.75 0.238729
Target:  5'- aAAGCGCAAG-CCGGCGuGCGCaCCGCg- -3'
miRNA:   3'- -UUUGUGUUUgGGCCGC-CGCG-GGCGau -5'
21265 5' -59.1 NC_004778.3 + 116156 1.04 0.002056
Target:  5'- cAAACACAAACCCGGCGGCGCCCGCUAa -3'
miRNA:   3'- -UUUGUGUUUGGGCCGCCGCGGGCGAU- -5'
21265 5' -59.1 NC_004778.3 + 118800 0.67 0.628407
Target:  5'- -cGCACAAuuacgagGCCCaGCGGCGCCgUGUa- -3'
miRNA:   3'- uuUGUGUU-------UGGGcCGCCGCGG-GCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.