Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21265 | 5' | -59.1 | NC_004778.3 | + | 47738 | 0.67 | 0.639771 |
Target: 5'- uGGCGCAAGCCUuGUGGCGCauacaCGCc- -3' miRNA: 3'- uUUGUGUUUGGGcCGCCGCGg----GCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 47135 | 0.66 | 0.680948 |
Target: 5'- -cGCACAAGCgcgUCGGCGugaGCGCCgGCg- -3' miRNA: 3'- uuUGUGUUUG---GGCCGC---CGCGGgCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 46906 | 0.66 | 0.680948 |
Target: 5'- uGGCACGuacGCgCUGGCcGCuGCCCGCUAc -3' miRNA: 3'- uUUGUGUu--UG-GGCCGcCG-CGGGCGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 45769 | 0.67 | 0.639771 |
Target: 5'- aAGACgACGAG-CUGGUGGUGUCCGCg- -3' miRNA: 3'- -UUUG-UGUUUgGGCCGCCGCGGGCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 45493 | 0.7 | 0.459832 |
Target: 5'- gGAACACAuugucAACaCCGGCGGCGagCGCa- -3' miRNA: 3'- -UUUGUGU-----UUG-GGCCGCCGCggGCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 43889 | 0.68 | 0.567769 |
Target: 5'- uGGACACAugauguguCCCGGCgcGGCGCCCcCg- -3' miRNA: 3'- -UUUGUGUuu------GGGCCG--CCGCGGGcGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 43310 | 0.71 | 0.42241 |
Target: 5'- -uGCAcCAAACCCGcguucaaaaacguGCGGCGCgCCGCg- -3' miRNA: 3'- uuUGU-GUUUGGGC-------------CGCCGCG-GGCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 39806 | 0.67 | 0.62944 |
Target: 5'- aAAACGCAAugCCGGUGuuccgauacaGCUCGCUGg -3' miRNA: 3'- -UUUGUGUUugGGCCGCcg--------CGGGCGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 39116 | 0.68 | 0.577972 |
Target: 5'- uGAACGCAAguacgugguGCgCGGCGGCGaCCaCGCc- -3' miRNA: 3'- -UUUGUGUU---------UGgGCCGCCGC-GG-GCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 38467 | 0.77 | 0.172491 |
Target: 5'- -cGCGCGAACCCGGCgugauucaGGCGCaaauCCGCUAa -3' miRNA: 3'- uuUGUGUUUGGGCCG--------CCGCG----GGCGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 38139 | 0.66 | 0.66761 |
Target: 5'- gAAGCGCAGGCCC-GCuGCGCCgcucgacaccuccaCGCUAc -3' miRNA: 3'- -UUUGUGUUUGGGcCGcCGCGG--------------GCGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 34153 | 0.68 | 0.598492 |
Target: 5'- cGACGCGGuCgCCGGCGGCGaCaaGCUGc -3' miRNA: 3'- uUUGUGUUuG-GGCCGCCGC-GggCGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 32271 | 0.68 | 0.588216 |
Target: 5'- -cGCGCAcgcuGgCCGGCGGCGCCgugucggGCUGg -3' miRNA: 3'- uuUGUGUu---UgGGCCGCCGCGGg------CGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 29238 | 0.67 | 0.660406 |
Target: 5'- --cCGCuccGCCgaGGCGGCGCCCGa-- -3' miRNA: 3'- uuuGUGuu-UGGg-CCGCCGCGGGCgau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 25241 | 0.66 | 0.680948 |
Target: 5'- --uCGCGAGCCgGGuCGuCGCCCGCc- -3' miRNA: 3'- uuuGUGUUUGGgCC-GCcGCGGGCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 17053 | 0.67 | 0.660406 |
Target: 5'- -uGCGC-AACUCGGCGG-GCCUGUUu -3' miRNA: 3'- uuUGUGuUUGGGCCGCCgCGGGCGAu -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 14701 | 0.67 | 0.650096 |
Target: 5'- cAACACGGACgCGGCguuugcauucgaGGUGCCCGg-- -3' miRNA: 3'- uUUGUGUUUGgGCCG------------CCGCGGGCgau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 10270 | 0.69 | 0.527476 |
Target: 5'- -cGCGCGGGaCCGGCGGCGCaUUGCa- -3' miRNA: 3'- uuUGUGUUUgGGCCGCCGCG-GGCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 9445 | 0.66 | 0.691162 |
Target: 5'- uGGACACGGccgucguCUCGGCGGCGCa-GCUc -3' miRNA: 3'- -UUUGUGUUu------GGGCCGCCGCGggCGAu -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 7860 | 0.74 | 0.26302 |
Target: 5'- cAGCAUAAGCgCGGUGGCGCCCa--- -3' miRNA: 3'- uUUGUGUUUGgGCCGCCGCGGGcgau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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