miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21265 5' -59.1 NC_004778.3 + 104345 0.66 0.685039
Target:  5'- cAACACGuuggccggcguacguGACUCGGuCGGCGCgCGCc- -3'
miRNA:   3'- uUUGUGU---------------UUGGGCC-GCCGCGgGCGau -5'
21265 5' -59.1 NC_004778.3 + 83268 0.67 0.608792
Target:  5'- cAGACGCGcggaacGGCgCGGCGGCuCCgCGCUAu -3'
miRNA:   3'- -UUUGUGU------UUGgGCCGCCGcGG-GCGAU- -5'
21265 5' -59.1 NC_004778.3 + 118800 0.67 0.628407
Target:  5'- -cGCACAAuuacgagGCCCaGCGGCGCCgUGUa- -3'
miRNA:   3'- uuUGUGUU-------UGGGcCGCCGCGG-GCGau -5'
21265 5' -59.1 NC_004778.3 + 47738 0.67 0.639771
Target:  5'- uGGCGCAAGCCUuGUGGCGCauacaCGCc- -3'
miRNA:   3'- uUUGUGUUUGGGcCGCCGCGg----GCGau -5'
21265 5' -59.1 NC_004778.3 + 45769 0.67 0.639771
Target:  5'- aAGACgACGAG-CUGGUGGUGUCCGCg- -3'
miRNA:   3'- -UUUG-UGUUUgGGCCGCCGCGGGCGau -5'
21265 5' -59.1 NC_004778.3 + 14701 0.67 0.650096
Target:  5'- cAACACGGACgCGGCguuugcauucgaGGUGCCCGg-- -3'
miRNA:   3'- uUUGUGUUUGgGCCG------------CCGCGGGCgau -5'
21265 5' -59.1 NC_004778.3 + 17053 0.67 0.660406
Target:  5'- -uGCGC-AACUCGGCGG-GCCUGUUu -3'
miRNA:   3'- uuUGUGuUUGGGCCGCCgCGGGCGAu -5'
21265 5' -59.1 NC_004778.3 + 38139 0.66 0.66761
Target:  5'- gAAGCGCAGGCCC-GCuGCGCCgcucgacaccuccaCGCUAc -3'
miRNA:   3'- -UUUGUGUUUGGGcCGcCGCGG--------------GCGAU- -5'
21265 5' -59.1 NC_004778.3 + 25241 0.66 0.680948
Target:  5'- --uCGCGAGCCgGGuCGuCGCCCGCc- -3'
miRNA:   3'- uuuGUGUUUGGgCC-GCcGCGGGCGau -5'
21265 5' -59.1 NC_004778.3 + 34153 0.68 0.598492
Target:  5'- cGACGCGGuCgCCGGCGGCGaCaaGCUGc -3'
miRNA:   3'- uUUGUGUUuG-GGCCGCCGC-GggCGAU- -5'
21265 5' -59.1 NC_004778.3 + 120949 0.68 0.588216
Target:  5'- uAAUACGAugaCUGGCGgggcgcgggccGCGCCCGCUGc -3'
miRNA:   3'- uUUGUGUUug-GGCCGC-----------CGCGGGCGAU- -5'
21265 5' -59.1 NC_004778.3 + 32271 0.68 0.588216
Target:  5'- -cGCGCAcgcuGgCCGGCGGCGCCgugucggGCUGg -3'
miRNA:   3'- uuUGUGUu---UgGGCCGCCGCGGg------CGAU- -5'
21265 5' -59.1 NC_004778.3 + 114927 0.75 0.238729
Target:  5'- aAAGCGCAAG-CCGGCGuGCGCaCCGCg- -3'
miRNA:   3'- -UUUGUGUUUgGGCCGC-CGCG-GGCGau -5'
21265 5' -59.1 NC_004778.3 + 7860 0.74 0.26302
Target:  5'- cAGCAUAAGCgCGGUGGCGCCCa--- -3'
miRNA:   3'- uUUGUGUUUGgGCCGCCGCGGGcgau -5'
21265 5' -59.1 NC_004778.3 + 127080 0.72 0.340096
Target:  5'- -uGCAC--GCCCGGCGaGUGCUCGCg- -3'
miRNA:   3'- uuUGUGuuUGGGCCGC-CGCGGGCGau -5'
21265 5' -59.1 NC_004778.3 + 10270 0.69 0.527476
Target:  5'- -cGCGCGGGaCCGGCGGCGCaUUGCa- -3'
miRNA:   3'- uuUGUGUUUgGGCCGCCGCG-GGCGau -5'
21265 5' -59.1 NC_004778.3 + 96590 0.69 0.537459
Target:  5'- gGAGCACccugcuAGCCaGcGCGGCGgCCGCUAg -3'
miRNA:   3'- -UUUGUGu-----UUGGgC-CGCCGCgGGCGAU- -5'
21265 5' -59.1 NC_004778.3 + 100259 0.68 0.567769
Target:  5'- --uCACGGGCCCGGCagcuGUGCCUGUg- -3'
miRNA:   3'- uuuGUGUUUGGGCCGc---CGCGGGCGau -5'
21265 5' -59.1 NC_004778.3 + 84453 0.68 0.567769
Target:  5'- aAAGCGCAcguGCUCGaaGCGGUGCCCcuGCUGg -3'
miRNA:   3'- -UUUGUGUu--UGGGC--CGCCGCGGG--CGAU- -5'
21265 5' -59.1 NC_004778.3 + 93220 0.68 0.577972
Target:  5'- gAAACGCAAACUCcaucaGCGGCGCCauCGCc- -3'
miRNA:   3'- -UUUGUGUUUGGGc----CGCCGCGG--GCGau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.