Results 21 - 40 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21265 | 5' | -59.1 | NC_004778.3 | + | 84453 | 0.68 | 0.567769 |
Target: 5'- aAAGCGCAcguGCUCGaaGCGGUGCCCcuGCUGg -3' miRNA: 3'- -UUUGUGUu--UGGGC--CGCCGCGGG--CGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 93220 | 0.68 | 0.577972 |
Target: 5'- gAAACGCAAACUCcaucaGCGGCGCCauCGCc- -3' miRNA: 3'- -UUUGUGUUUGGGc----CGCCGCGG--GCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 32271 | 0.68 | 0.588216 |
Target: 5'- -cGCGCAcgcuGgCCGGCGGCGCCgugucggGCUGg -3' miRNA: 3'- uuUGUGUu---UgGGCCGCCGCGGg------CGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 49992 | 0.68 | 0.598492 |
Target: 5'- cAAGCGC--GCCCGuGCGGgGCCCaguGCUu -3' miRNA: 3'- -UUUGUGuuUGGGC-CGCCgCGGG---CGAu -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 39116 | 0.68 | 0.577972 |
Target: 5'- uGAACGCAAguacgugguGCgCGGCGGCGaCCaCGCc- -3' miRNA: 3'- -UUUGUGUU---------UGgGCCGCCGC-GG-GCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 43889 | 0.68 | 0.567769 |
Target: 5'- uGGACACAugauguguCCCGGCgcGGCGCCCcCg- -3' miRNA: 3'- -UUUGUGUuu------GGGCCG--CCGCGGGcGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 90717 | 0.7 | 0.469225 |
Target: 5'- cGGCGCugcGCUCGGCGGCGagCGCUGc -3' miRNA: 3'- uUUGUGuu-UGGGCCGCCGCggGCGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 45493 | 0.7 | 0.459832 |
Target: 5'- gGAACACAuugucAACaCCGGCGGCGagCGCa- -3' miRNA: 3'- -UUUGUGU-----UUG-GGCCGCCGCggGCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 43310 | 0.71 | 0.42241 |
Target: 5'- -uGCAcCAAACCCGcguucaaaaacguGCGGCGCgCCGCg- -3' miRNA: 3'- uuUGU-GUUUGGGC-------------CGCCGCG-GGCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 53293 | 0.71 | 0.380179 |
Target: 5'- -uGCACuAACgCCGGCGGCGgUUGCUGu -3' miRNA: 3'- uuUGUGuUUG-GGCCGCCGCgGGCGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 99073 | 0.67 | 0.619111 |
Target: 5'- gAAugAC-GACCCGGC-GCGUCCGUa- -3' miRNA: 3'- -UUugUGuUUGGGCCGcCGCGGGCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 39806 | 0.67 | 0.62944 |
Target: 5'- aAAACGCAAugCCGGUGuuccgauacaGCUCGCUGg -3' miRNA: 3'- -UUUGUGUUugGGCCGCcg--------CGGGCGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 98132 | 0.67 | 0.660406 |
Target: 5'- aAGGgGCGAucGCCCGGC-GCGCUCGUUc -3' miRNA: 3'- -UUUgUGUU--UGGGCCGcCGCGGGCGAu -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 29238 | 0.67 | 0.660406 |
Target: 5'- --cCGCuccGCCgaGGCGGCGCCCGa-- -3' miRNA: 3'- uuuGUGuu-UGGg-CCGCCGCGGGCgau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 2200 | 0.66 | 0.670693 |
Target: 5'- gGAACGCGGcUgCGGUGGCGgCCGaCUAc -3' miRNA: 3'- -UUUGUGUUuGgGCCGCCGCgGGC-GAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 47135 | 0.66 | 0.680948 |
Target: 5'- -cGCACAAGCgcgUCGGCGugaGCGCCgGCg- -3' miRNA: 3'- uuUGUGUUUG---GGCCGC---CGCGGgCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 46906 | 0.66 | 0.680948 |
Target: 5'- uGGCACGuacGCgCUGGCcGCuGCCCGCUAc -3' miRNA: 3'- uUUGUGUu--UG-GGCCGcCG-CGGGCGAU- -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 95168 | 0.66 | 0.691162 |
Target: 5'- cAGGCGCAccuGCCCGuCGGCGCaCgGCg- -3' miRNA: 3'- -UUUGUGUu--UGGGCcGCCGCG-GgCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 1670 | 0.66 | 0.691162 |
Target: 5'- uAugGCcGACCuCGGCaGCGCcCCGCg- -3' miRNA: 3'- uUugUGuUUGG-GCCGcCGCG-GGCGau -5' |
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21265 | 5' | -59.1 | NC_004778.3 | + | 116156 | 1.04 | 0.002056 |
Target: 5'- cAAACACAAACCCGGCGGCGCCCGCUAa -3' miRNA: 3'- -UUUGUGUUUGGGCCGCCGCGGGCGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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