miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21266 3' -52.5 NC_004778.3 + 64950 0.66 0.962121
Target:  5'- -cGCAGCgCGCgucGCCCGAACAagCAUAu -3'
miRNA:   3'- caCGUUGgGCG---UGGGUUUGUcaGUAU- -5'
21266 3' -52.5 NC_004778.3 + 78935 0.66 0.958359
Target:  5'- cUGCAGacaaCGUAUCCcAACGGUCGUAg -3'
miRNA:   3'- cACGUUgg--GCGUGGGuUUGUCAGUAU- -5'
21266 3' -52.5 NC_004778.3 + 38174 0.66 0.958359
Target:  5'- -cGCuACCCGCGCCUAGucgcaucaAGUCGc- -3'
miRNA:   3'- caCGuUGGGCGUGGGUUug------UCAGUau -5'
21266 3' -52.5 NC_004778.3 + 32470 0.66 0.958359
Target:  5'- cGUGUcGCCUuuGCACCa--GCGGUCGUGg -3'
miRNA:   3'- -CACGuUGGG--CGUGGguuUGUCAGUAU- -5'
21266 3' -52.5 NC_004778.3 + 94795 0.66 0.954349
Target:  5'- cUGCGGCCCGgGCUCGGACGcaacUCAa- -3'
miRNA:   3'- cACGUUGGGCgUGGGUUUGUc---AGUau -5'
21266 3' -52.5 NC_004778.3 + 5112 0.66 0.954349
Target:  5'- cGUGCAGCUCGCgcugGCCgAAAUAGaCAa- -3'
miRNA:   3'- -CACGUUGGGCG----UGGgUUUGUCaGUau -5'
21266 3' -52.5 NC_004778.3 + 94995 0.66 0.954349
Target:  5'- cGUGCGGCgCGCaACCCAccggcacguuGCAGUCc-- -3'
miRNA:   3'- -CACGUUGgGCG-UGGGUu---------UGUCAGuau -5'
21266 3' -52.5 NC_004778.3 + 81925 0.66 0.950086
Target:  5'- -gGCAgGCCgCGCACCUAccggcGCAGUCGg- -3'
miRNA:   3'- caCGU-UGG-GCGUGGGUu----UGUCAGUau -5'
21266 3' -52.5 NC_004778.3 + 128043 0.67 0.940783
Target:  5'- -cGCAGCCCGUAa-CAcAACAGUCGc- -3'
miRNA:   3'- caCGUUGGGCGUggGU-UUGUCAGUau -5'
21266 3' -52.5 NC_004778.3 + 39170 0.67 0.940291
Target:  5'- gGUGCGcacgaccACCgCGuCGCCCGcuACGGUCAUGc -3'
miRNA:   3'- -CACGU-------UGG-GC-GUGGGUu-UGUCAGUAU- -5'
21266 3' -52.5 NC_004778.3 + 6214 0.67 0.935738
Target:  5'- gGUGCAuCCgCGUAUgaAAACAGUCGUGg -3'
miRNA:   3'- -CACGUuGG-GCGUGggUUUGUCAGUAU- -5'
21266 3' -52.5 NC_004778.3 + 102334 0.67 0.935738
Target:  5'- --aCAGCCCGCGuCCaCAAagucGCAGUCAa- -3'
miRNA:   3'- cacGUUGGGCGU-GG-GUU----UGUCAGUau -5'
21266 3' -52.5 NC_004778.3 + 26040 0.67 0.935738
Target:  5'- -aGCGugCCaGCGCCC--ACGGUCGc- -3'
miRNA:   3'- caCGUugGG-CGUGGGuuUGUCAGUau -5'
21266 3' -52.5 NC_004778.3 + 47617 0.67 0.930428
Target:  5'- -gGCGACCCGCGCU---ACAGUUu-- -3'
miRNA:   3'- caCGUUGGGCGUGGguuUGUCAGuau -5'
21266 3' -52.5 NC_004778.3 + 120461 0.67 0.91901
Target:  5'- -gGCAACCgGCugCUggugGAACAGUaCAUGu -3'
miRNA:   3'- caCGUUGGgCGugGG----UUUGUCA-GUAU- -5'
21266 3' -52.5 NC_004778.3 + 1683 0.67 0.91901
Target:  5'- gGUGCGGCCaGCAgCgCGAGCAGgcgCAUGc -3'
miRNA:   3'- -CACGUUGGgCGUgG-GUUUGUCa--GUAU- -5'
21266 3' -52.5 NC_004778.3 + 121356 0.68 0.912903
Target:  5'- -aGCGACCUGCuACCCGGcCAGacCAUAa -3'
miRNA:   3'- caCGUUGGGCG-UGGGUUuGUCa-GUAU- -5'
21266 3' -52.5 NC_004778.3 + 15746 0.68 0.906532
Target:  5'- -gGCcGCCCGCaACCUAAGCugGGUUGUAa -3'
miRNA:   3'- caCGuUGGGCG-UGGGUUUG--UCAGUAU- -5'
21266 3' -52.5 NC_004778.3 + 33088 0.68 0.893008
Target:  5'- -aGCGGCCCGCugCCGcgcuACAcGUaCAUGa -3'
miRNA:   3'- caCGUUGGGCGugGGUu---UGU-CA-GUAU- -5'
21266 3' -52.5 NC_004778.3 + 65542 0.68 0.893008
Target:  5'- uUGUAAUCCGCGUCCGAACcuGUCAa- -3'
miRNA:   3'- cACGUUGGGCGUGGGUUUGu-CAGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.