miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21266 3' -52.5 NC_004778.3 + 50002 0.68 0.885863
Target:  5'- aUGCAGCCCGCaagcgcGCCCGuGCGGg---- -3'
miRNA:   3'- cACGUUGGGCG------UGGGUuUGUCaguau -5'
21266 3' -52.5 NC_004778.3 + 48817 0.69 0.870828
Target:  5'- -aGCAGCaCCGCgACCaCAAucGCGGUUAUAg -3'
miRNA:   3'- caCGUUG-GGCG-UGG-GUU--UGUCAGUAU- -5'
21266 3' -52.5 NC_004778.3 + 124486 0.69 0.86295
Target:  5'- -cGCGauaagGCCCGCGCCCGuGCgucgAGUCAc- -3'
miRNA:   3'- caCGU-----UGGGCGUGGGUuUG----UCAGUau -5'
21266 3' -52.5 NC_004778.3 + 10048 0.69 0.86295
Target:  5'- -aGCGcACaCCGCGCCCGGGCGG-CAc- -3'
miRNA:   3'- caCGU-UG-GGCGUGGGUUUGUCaGUau -5'
21266 3' -52.5 NC_004778.3 + 112532 0.69 0.86295
Target:  5'- -cGCGACCgCGCGCUU--GCGGUCAa- -3'
miRNA:   3'- caCGUUGG-GCGUGGGuuUGUCAGUau -5'
21266 3' -52.5 NC_004778.3 + 71060 0.69 0.854841
Target:  5'- uUGCGugCCGCACCau--CAGUCcgAu -3'
miRNA:   3'- cACGUugGGCGUGGguuuGUCAGuaU- -5'
21266 3' -52.5 NC_004778.3 + 21099 0.69 0.854841
Target:  5'- gGUGCAGCCCGCggagcggacguuGCCCAGAUcGcCGa- -3'
miRNA:   3'- -CACGUUGGGCG------------UGGGUUUGuCaGUau -5'
21266 3' -52.5 NC_004778.3 + 112185 0.7 0.801763
Target:  5'- cGUGCGgcccgaccccgACCCGCuguuuCCCGAGCGGuUCAa- -3'
miRNA:   3'- -CACGU-----------UGGGCGu----GGGUUUGUC-AGUau -5'
21266 3' -52.5 NC_004778.3 + 95350 0.71 0.742562
Target:  5'- -aGCAGCCCgucgGCAgCCGGGCAGUUAc- -3'
miRNA:   3'- caCGUUGGG----CGUgGGUUUGUCAGUau -5'
21266 3' -52.5 NC_004778.3 + 73617 0.72 0.732256
Target:  5'- -cGCAugUCGCGCUCGGACAGUgGc- -3'
miRNA:   3'- caCGUugGGCGUGGGUUUGUCAgUau -5'
21266 3' -52.5 NC_004778.3 + 9155 0.72 0.700803
Target:  5'- aUGCAGCCCGcCGCCCAAAUAuugCAc- -3'
miRNA:   3'- cACGUUGGGC-GUGGGUUUGUca-GUau -5'
21266 3' -52.5 NC_004778.3 + 121108 0.81 0.249032
Target:  5'- -cGCGGCCCGCGCCCcgcCAGUCAUc -3'
miRNA:   3'- caCGUUGGGCGUGGGuuuGUCAGUAu -5'
21266 3' -52.5 NC_004778.3 + 118569 1.07 0.005431
Target:  5'- cGUGCAACCCGCACCCAAACAGUCAUAu -3'
miRNA:   3'- -CACGUUGGGCGUGGGUUUGUCAGUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.