miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21266 3' -52.5 NC_004778.3 + 81925 0.66 0.950086
Target:  5'- -gGCAgGCCgCGCACCUAccggcGCAGUCGg- -3'
miRNA:   3'- caCGU-UGG-GCGUGGGUu----UGUCAGUau -5'
21266 3' -52.5 NC_004778.3 + 94795 0.66 0.954349
Target:  5'- cUGCGGCCCGgGCUCGGACGcaacUCAa- -3'
miRNA:   3'- cACGUUGGGCgUGGGUUUGUc---AGUau -5'
21266 3' -52.5 NC_004778.3 + 94995 0.66 0.954349
Target:  5'- cGUGCGGCgCGCaACCCAccggcacguuGCAGUCc-- -3'
miRNA:   3'- -CACGUUGgGCG-UGGGUu---------UGUCAGuau -5'
21266 3' -52.5 NC_004778.3 + 95350 0.71 0.742562
Target:  5'- -aGCAGCCCgucgGCAgCCGGGCAGUUAc- -3'
miRNA:   3'- caCGUUGGG----CGUgGGUUUGUCAGUau -5'
21266 3' -52.5 NC_004778.3 + 102334 0.67 0.935738
Target:  5'- --aCAGCCCGCGuCCaCAAagucGCAGUCAa- -3'
miRNA:   3'- cacGUUGGGCGU-GG-GUU----UGUCAGUau -5'
21266 3' -52.5 NC_004778.3 + 112185 0.7 0.801763
Target:  5'- cGUGCGgcccgaccccgACCCGCuguuuCCCGAGCGGuUCAa- -3'
miRNA:   3'- -CACGU-----------UGGGCGu----GGGUUUGUC-AGUau -5'
21266 3' -52.5 NC_004778.3 + 112532 0.69 0.86295
Target:  5'- -cGCGACCgCGCGCUU--GCGGUCAa- -3'
miRNA:   3'- caCGUUGG-GCGUGGGuuUGUCAGUau -5'
21266 3' -52.5 NC_004778.3 + 118569 1.07 0.005431
Target:  5'- cGUGCAACCCGCACCCAAACAGUCAUAu -3'
miRNA:   3'- -CACGUUGGGCGUGGGUUUGUCAGUAU- -5'
21266 3' -52.5 NC_004778.3 + 120461 0.67 0.91901
Target:  5'- -gGCAACCgGCugCUggugGAACAGUaCAUGu -3'
miRNA:   3'- caCGUUGGgCGugGG----UUUGUCA-GUAU- -5'
21266 3' -52.5 NC_004778.3 + 121108 0.81 0.249032
Target:  5'- -cGCGGCCCGCGCCCcgcCAGUCAUc -3'
miRNA:   3'- caCGUUGGGCGUGGGuuuGUCAGUAu -5'
21266 3' -52.5 NC_004778.3 + 121356 0.68 0.912903
Target:  5'- -aGCGACCUGCuACCCGGcCAGacCAUAa -3'
miRNA:   3'- caCGUUGGGCG-UGGGUUuGUCa-GUAU- -5'
21266 3' -52.5 NC_004778.3 + 124486 0.69 0.86295
Target:  5'- -cGCGauaagGCCCGCGCCCGuGCgucgAGUCAc- -3'
miRNA:   3'- caCGU-----UGGGCGUGGGUuUG----UCAGUau -5'
21266 3' -52.5 NC_004778.3 + 128043 0.67 0.940783
Target:  5'- -cGCAGCCCGUAa-CAcAACAGUCGc- -3'
miRNA:   3'- caCGUUGGGCGUggGU-UUGUCAGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.