miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21267 3' -53.6 NC_004778.3 + 32316 0.66 0.945658
Target:  5'- cCAGGcCGCUCuggauCAAC-UUGGUGGUAa -3'
miRNA:   3'- aGUUC-GCGAGuu---GUUGuGACCGCCGU- -5'
21267 3' -53.6 NC_004778.3 + 68626 0.66 0.945658
Target:  5'- aCAA-CGa-CGGCAACGCcGGCGGCGg -3'
miRNA:   3'- aGUUcGCgaGUUGUUGUGaCCGCCGU- -5'
21267 3' -53.6 NC_004778.3 + 112734 0.66 0.945658
Target:  5'- aUCAuagucGUGCUCGguuauaauaaGCGACAaacaUGGCGGUg -3'
miRNA:   3'- -AGUu----CGCGAGU----------UGUUGUg---ACCGCCGu -5'
21267 3' -53.6 NC_004778.3 + 37675 0.66 0.945658
Target:  5'- aCAcuGCGUUCGcgcacgugcACAACGCUGuCGGCGa -3'
miRNA:   3'- aGUu-CGCGAGU---------UGUUGUGACcGCCGU- -5'
21267 3' -53.6 NC_004778.3 + 63463 0.66 0.942864
Target:  5'- -uGGGCGUUCGGCGaaagcgccuucuucgGCGCgGGCGGa- -3'
miRNA:   3'- agUUCGCGAGUUGU---------------UGUGaCCGCCgu -5'
21267 3' -53.6 NC_004778.3 + 106909 0.66 0.94095
Target:  5'- cCGAGCGCUUGAacCAAUucaaGGCGGCc -3'
miRNA:   3'- aGUUCGCGAGUU--GUUGuga-CCGCCGu -5'
21267 3' -53.6 NC_004778.3 + 124281 0.66 0.94095
Target:  5'- cUCGGcGCGCuUCAAgAAUGCUGaagcGCGGCGc -3'
miRNA:   3'- -AGUU-CGCG-AGUUgUUGUGAC----CGCCGU- -5'
21267 3' -53.6 NC_004778.3 + 121967 0.66 0.94095
Target:  5'- gCGGGCGacaUCAACcGCAUUacGcGCGGCAa -3'
miRNA:   3'- aGUUCGCg--AGUUGuUGUGA--C-CGCCGU- -5'
21267 3' -53.6 NC_004778.3 + 128334 0.66 0.935986
Target:  5'- aUCu-GCGCUUGugGGgACgacGGCGGCGu -3'
miRNA:   3'- -AGuuCGCGAGUugUUgUGa--CCGCCGU- -5'
21267 3' -53.6 NC_004778.3 + 111380 0.66 0.935986
Target:  5'- gCAuuGUGCUCAucuuguuuACACUGGCGGa- -3'
miRNA:   3'- aGUu-CGCGAGUugu-----UGUGACCGCCgu -5'
21267 3' -53.6 NC_004778.3 + 28001 0.66 0.930764
Target:  5'- -gAAGCGCgcaccugcgagCAACGcaugGCGCUcaacGGCGGCGa -3'
miRNA:   3'- agUUCGCGa----------GUUGU----UGUGA----CCGCCGU- -5'
21267 3' -53.6 NC_004778.3 + 60651 0.66 0.930764
Target:  5'- gCAuGCGCaUCAACGAgGC--GCGGCAg -3'
miRNA:   3'- aGUuCGCG-AGUUGUUgUGacCGCCGU- -5'
21267 3' -53.6 NC_004778.3 + 76078 0.66 0.925283
Target:  5'- -aAGGC-CUCcccCAACACcuuUGGCGGCAc -3'
miRNA:   3'- agUUCGcGAGuu-GUUGUG---ACCGCCGU- -5'
21267 3' -53.6 NC_004778.3 + 36266 0.66 0.925283
Target:  5'- cCAAcGCGgUCAACAACGCgGGCcugacgagGGCc -3'
miRNA:   3'- aGUU-CGCgAGUUGUUGUGaCCG--------CCGu -5'
21267 3' -53.6 NC_004778.3 + 114254 0.66 0.919544
Target:  5'- uUCGGGCGg-C-ACAAgGCUGGCGGa- -3'
miRNA:   3'- -AGUUCGCgaGuUGUUgUGACCGCCgu -5'
21267 3' -53.6 NC_004778.3 + 113889 0.66 0.919544
Target:  5'- cCGGGCGCgUCG--GGCGaaGGCGGCGc -3'
miRNA:   3'- aGUUCGCG-AGUugUUGUgaCCGCCGU- -5'
21267 3' -53.6 NC_004778.3 + 95767 0.66 0.918955
Target:  5'- cCGGGCGCUauccgcgCGGCAGCGCgccGGCcGCGc -3'
miRNA:   3'- aGUUCGCGA-------GUUGUUGUGa--CCGcCGU- -5'
21267 3' -53.6 NC_004778.3 + 43599 0.67 0.913546
Target:  5'- uUCAAcGCGCUUGucGCAACGCUcGUGGUc -3'
miRNA:   3'- -AGUU-CGCGAGU--UGUUGUGAcCGCCGu -5'
21267 3' -53.6 NC_004778.3 + 13880 0.67 0.913546
Target:  5'- uUCAGuGCGCuUCGACAcaaauuuggGCACguUGGcCGGCGa -3'
miRNA:   3'- -AGUU-CGCG-AGUUGU---------UGUG--ACC-GCCGU- -5'
21267 3' -53.6 NC_004778.3 + 85532 0.67 0.905366
Target:  5'- gCGGGCGUuugcggcggcgaugUCAugGACGCgggcguuugcGGCGGCGa -3'
miRNA:   3'- aGUUCGCG--------------AGUugUUGUGa---------CCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.