miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21267 5' -63.9 NC_004778.3 + 25403 0.66 0.579938
Target:  5'- uGCGCUGGgaGGCgGGCGACGaccCGGCUc- -3'
miRNA:   3'- cCGCGGCUg-CCG-CCGCUGU---GCCGGcu -5'
21267 5' -63.9 NC_004778.3 + 33164 0.66 0.570375
Target:  5'- gGGUGCUGGaacGCGGCGAUGCGcacGCgGAa -3'
miRNA:   3'- -CCGCGGCUgc-CGCCGCUGUGC---CGgCU- -5'
21267 5' -63.9 NC_004778.3 + 34973 0.66 0.570375
Target:  5'- cGGauuUCGAUGGCGGCcacccuagucGGCgAUGGCCGAc -3'
miRNA:   3'- -CCgc-GGCUGCCGCCG----------CUG-UGCCGGCU- -5'
21267 5' -63.9 NC_004778.3 + 53192 0.66 0.56085
Target:  5'- cGGCGgCGguugcugugGCGGCGGUugcuGugGCGGCgGu -3'
miRNA:   3'- -CCGCgGC---------UGCCGCCG----CugUGCCGgCu -5'
21267 5' -63.9 NC_004778.3 + 29088 0.66 0.56085
Target:  5'- gGGCGCCGccuCGGCGGa---GCGGaCCc- -3'
miRNA:   3'- -CCGCGGCu--GCCGCCgcugUGCC-GGcu -5'
21267 5' -63.9 NC_004778.3 + 8738 0.66 0.56085
Target:  5'- -aCGCCGcCGGCGcCGugGCGcGCCa- -3'
miRNA:   3'- ccGCGGCuGCCGCcGCugUGC-CGGcu -5'
21267 5' -63.9 NC_004778.3 + 2070 0.66 0.559901
Target:  5'- cGGCGUCGAcaaagcgcCGGCGGUuAUaaucaaaccugcaGCGGCUGGc -3'
miRNA:   3'- -CCGCGGCU--------GCCGCCGcUG-------------UGCCGGCU- -5'
21267 5' -63.9 NC_004778.3 + 38296 0.66 0.551371
Target:  5'- uGCGCCaGCGcGCacGCGAcCGCGcGCCGAg -3'
miRNA:   3'- cCGCGGcUGC-CGc-CGCU-GUGC-CGGCU- -5'
21267 5' -63.9 NC_004778.3 + 29939 0.66 0.551371
Target:  5'- -aCGCCGAgacGCGGCGAaaaCugGGCCa- -3'
miRNA:   3'- ccGCGGCUgc-CGCCGCU---GugCCGGcu -5'
21267 5' -63.9 NC_004778.3 + 32271 0.66 0.550425
Target:  5'- cGCGCaCGcUGGcCGGCGGCGCcgugucgGGCUGGu -3'
miRNA:   3'- cCGCG-GCuGCC-GCCGCUGUG-------CCGGCU- -5'
21267 5' -63.9 NC_004778.3 + 37818 0.66 0.54194
Target:  5'- gGGCGUCucaaacaGCGcGCGGCGACACGcGUgGu -3'
miRNA:   3'- -CCGCGGc------UGC-CGCCGCUGUGC-CGgCu -5'
21267 5' -63.9 NC_004778.3 + 50782 0.66 0.54194
Target:  5'- -aUGCCGAUGGCcGCGGuuagcuuuuCGCGGCCc- -3'
miRNA:   3'- ccGCGGCUGCCGcCGCU---------GUGCCGGcu -5'
21267 5' -63.9 NC_004778.3 + 5066 0.66 0.531629
Target:  5'- uGGCGgCGugGuauaaccGCGGCGACAaaacCGGUCu- -3'
miRNA:   3'- -CCGCgGCugC-------CGCCGCUGU----GCCGGcu -5'
21267 5' -63.9 NC_004778.3 + 110025 0.66 0.523246
Target:  5'- cGCGCCGACGGCGuuUGGCuACuGCCc- -3'
miRNA:   3'- cCGCGGCUGCCGCc-GCUG-UGcCGGcu -5'
21267 5' -63.9 NC_004778.3 + 34156 0.66 0.523246
Target:  5'- cGCgGUCGcCGGCGGCGACAa-GCUGc -3'
miRNA:   3'- cCG-CGGCuGCCGCCGCUGUgcCGGCu -5'
21267 5' -63.9 NC_004778.3 + 71156 0.66 0.523246
Target:  5'- gGGUGUCGGCGGgGGCGu--UGG-CGAg -3'
miRNA:   3'- -CCGCGGCUGCCgCCGCuguGCCgGCU- -5'
21267 5' -63.9 NC_004778.3 + 61791 0.66 0.523246
Target:  5'- cGGCGuuGGCGcGCgcuGGCuGCGCGGCg-- -3'
miRNA:   3'- -CCGCggCUGC-CG---CCGcUGUGCCGgcu -5'
21267 5' -63.9 NC_004778.3 + 975 0.67 0.513992
Target:  5'- cGGCGUCGAuCGGCGcagcaGCGGCuccaacgcgugGCGGuCCGc -3'
miRNA:   3'- -CCGCGGCU-GCCGC-----CGCUG-----------UGCC-GGCu -5'
21267 5' -63.9 NC_004778.3 + 69501 0.67 0.513992
Target:  5'- aGCGCCauuuCaGCGGCGAUggGGuCCGAc -3'
miRNA:   3'- cCGCGGcu--GcCGCCGCUGugCC-GGCU- -5'
21267 5' -63.9 NC_004778.3 + 7143 0.67 0.513992
Target:  5'- aGGaauCCGucuCGGCgGGCGGCGCG-CCGAg -3'
miRNA:   3'- -CCgc-GGCu--GCCG-CCGCUGUGCcGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.