miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21268 3' -52.5 NC_004778.3 + 71348 0.66 0.969431
Target:  5'- -gAGCGUaggCgAGGGUGUCGGCGGg -3'
miRNA:   3'- caUUGCAcaaGgUCCCGUAGUCGCUg -5'
21268 3' -52.5 NC_004778.3 + 71372 0.66 0.969431
Target:  5'- -gAGCGUaggCgAGGGUGUCGGCGGg -3'
miRNA:   3'- caUUGCAcaaGgUCCCGUAGUCGCUg -5'
21268 3' -52.5 NC_004778.3 + 68048 0.66 0.966221
Target:  5'- aUAGCGUuUUCCGGGGCgggcucaacGUCgAGCaGGCu -3'
miRNA:   3'- cAUUGCAcAAGGUCCCG---------UAG-UCG-CUG- -5'
21268 3' -52.5 NC_004778.3 + 117063 0.66 0.96278
Target:  5'- -cAGCGUGUUuugcacCCAGGGguUgaggucgcgCAGCGAUu -3'
miRNA:   3'- caUUGCACAA------GGUCCCguA---------GUCGCUG- -5'
21268 3' -52.5 NC_004778.3 + 64596 0.67 0.941923
Target:  5'- -gAACGUGUaguugUCGGGGCAUUcGCGcACc -3'
miRNA:   3'- caUUGCACAa----GGUCCCGUAGuCGC-UG- -5'
21268 3' -52.5 NC_004778.3 + 38309 0.67 0.941923
Target:  5'- gGUAGCGUGgaggugUCgAGcGGCG-CAGCGGg -3'
miRNA:   3'- -CAUUGCACa-----AGgUC-CCGUaGUCGCUg -5'
21268 3' -52.5 NC_004778.3 + 71154 0.67 0.936992
Target:  5'- -gAGgGUGUcggCgGGGGCGUUGGCGAg -3'
miRNA:   3'- caUUgCACAa--GgUCCCGUAGUCGCUg -5'
21268 3' -52.5 NC_004778.3 + 71238 0.68 0.926351
Target:  5'- -gAGgGUGUcggCgAGGGUGUCGGCGAa -3'
miRNA:   3'- caUUgCACAa--GgUCCCGUAGUCGCUg -5'
21268 3' -52.5 NC_004778.3 + 71274 0.68 0.926351
Target:  5'- -gAGgGUGUcggCgAGGGUGUCGGCGAg -3'
miRNA:   3'- caUUgCACAa--GgUCCCGUAGUCGCUg -5'
21268 3' -52.5 NC_004778.3 + 32578 0.68 0.92064
Target:  5'- cGUAACGUGcUCCAcGGCGgucaggCAcGCGAUg -3'
miRNA:   3'- -CAUUGCACaAGGUcCCGUa-----GU-CGCUG- -5'
21268 3' -52.5 NC_004778.3 + 127932 0.7 0.849675
Target:  5'- aUGACGUGgagaUgGGGGUGUuCAGCGGCg -3'
miRNA:   3'- cAUUGCACaa--GgUCCCGUA-GUCGCUG- -5'
21268 3' -52.5 NC_004778.3 + 107017 0.72 0.716837
Target:  5'- uUAACG----CCAGGGCGUCGGCGGu -3'
miRNA:   3'- cAUUGCacaaGGUCCCGUAGUCGCUg -5'
21268 3' -52.5 NC_004778.3 + 71516 0.74 0.642835
Target:  5'- -aGGCGUuggCCAGGGUGUCGGCGGa -3'
miRNA:   3'- caUUGCAcaaGGUCCCGUAGUCGCUg -5'
21268 3' -52.5 NC_004778.3 + 121919 1.09 0.004491
Target:  5'- cGUAACGUGUUCCAGGGCAUCAGCGACc -3'
miRNA:   3'- -CAUUGCACAAGGUCCCGUAGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.