miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21268 5' -55.1 NC_004778.3 + 121601 0.66 0.927844
Target:  5'- aGG-CGCggguUCuGCUGCaGCGCGCg -3'
miRNA:   3'- cCCaGCGauuuGGuCGAUGcCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 106793 0.66 0.927844
Target:  5'- uGGuGUUGUUGAGCUcGCUGCGcaGCGUuuGCg -3'
miRNA:   3'- -CC-CAGCGAUUUGGuCGAUGC--CGCG--CG- -5'
21268 5' -55.1 NC_004778.3 + 109945 0.66 0.927844
Target:  5'- aGGUgCGC--AACCAuuuGCacguCGGCGCGCc -3'
miRNA:   3'- cCCA-GCGauUUGGU---CGau--GCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 11648 0.66 0.927844
Target:  5'- uGGUCGUaucGCC-GUUACaGCGCGUg -3'
miRNA:   3'- cCCAGCGauuUGGuCGAUGcCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 33534 0.66 0.927844
Target:  5'- uGGG-CGCgu--CCAaagACGGCGCGUc -3'
miRNA:   3'- -CCCaGCGauuuGGUcgaUGCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 97597 0.66 0.924599
Target:  5'- cGGGUCGUUGAACgGcaccauuugcacucGCUgcagauuagaaccgGCGGCuuccuuGCGCg -3'
miRNA:   3'- -CCCAGCGAUUUGgU--------------CGA--------------UGCCG------CGCG- -5'
21268 5' -55.1 NC_004778.3 + 32441 0.66 0.922387
Target:  5'- ----gGCUGcAUCAGCaUGCGGCGCaGCc -3'
miRNA:   3'- cccagCGAUuUGGUCG-AUGCCGCG-CG- -5'
21268 5' -55.1 NC_004778.3 + 38281 0.66 0.916686
Target:  5'- cGGGccugCGCUucACU-GCggacgcggACGGCGUGCg -3'
miRNA:   3'- -CCCa---GCGAuuUGGuCGa-------UGCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 38926 0.66 0.916686
Target:  5'- uGGGauagCGCUGcGCguGCggauCGGCGUGg -3'
miRNA:   3'- -CCCa---GCGAUuUGguCGau--GCCGCGCg -5'
21268 5' -55.1 NC_004778.3 + 117988 0.66 0.916686
Target:  5'- uGGGUUGCUugauGAACUcGUUGucgucgucgcUGGUGCGCc -3'
miRNA:   3'- -CCCAGCGA----UUUGGuCGAU----------GCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 29243 0.66 0.916686
Target:  5'- uGGGUcCGCUccGCCGag-GCGGCGCcCg -3'
miRNA:   3'- -CCCA-GCGAuuUGGUcgaUGCCGCGcG- -5'
21268 5' -55.1 NC_004778.3 + 7501 0.66 0.914928
Target:  5'- uGGGUCaaacaGCgcgAAuacucGCCucccuuauaauuauAGCUgaACGGCGCGCg -3'
miRNA:   3'- -CCCAG-----CGa--UU-----UGG--------------UCGA--UGCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 45755 0.66 0.910741
Target:  5'- aGGG-CGCggcuAugCAGaa--GGCGCGCc -3'
miRNA:   3'- -CCCaGCGau--UugGUCgaugCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 45411 0.66 0.910134
Target:  5'- -uGUCGCUGAugcuguuaguuuuGCUGGC-GCGGCGCu- -3'
miRNA:   3'- ccCAGCGAUU-------------UGGUCGaUGCCGCGcg -5'
21268 5' -55.1 NC_004778.3 + 30929 0.66 0.905185
Target:  5'- cGGGUUGUUGucgCGGCgcacccacaaaaauUGGCGCGCu -3'
miRNA:   3'- -CCCAGCGAUuugGUCGau------------GCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 95865 0.66 0.904556
Target:  5'- cGGG-CGacauGACCAGC---GGUGCGCa -3'
miRNA:   3'- -CCCaGCgau-UUGGUCGaugCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 61632 0.66 0.904556
Target:  5'- uGGcGcCGCgcAGCCAGCgcGCGccaacgccGCGCGCa -3'
miRNA:   3'- -CC-CaGCGauUUGGUCGa-UGC--------CGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 127206 0.66 0.904556
Target:  5'- aGGUCGUUAAGCgcgucacaCAGCUGCcguacuauauuGGCcacuaGCGCg -3'
miRNA:   3'- cCCAGCGAUUUG--------GUCGAUG-----------CCG-----CGCG- -5'
21268 5' -55.1 NC_004778.3 + 9265 0.66 0.904556
Target:  5'- -aGUgGUUuGACCAGCgcGCGGUGCuGCa -3'
miRNA:   3'- ccCAgCGAuUUGGUCGa-UGCCGCG-CG- -5'
21268 5' -55.1 NC_004778.3 + 36629 0.66 0.904556
Target:  5'- -aGUCGCU-GACCGGCauuuUGCG-CGUGCc -3'
miRNA:   3'- ccCAGCGAuUUGGUCG----AUGCcGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.