miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21268 5' -55.1 NC_004778.3 + 1736 0.69 0.804036
Target:  5'- cGGGcCGCaGAgucucACUaaGGUguugACGGCGCGCa -3'
miRNA:   3'- -CCCaGCGaUU-----UGG--UCGa---UGCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 2610 0.69 0.804036
Target:  5'- uGGUCGau-AACCAGC---GGCGUGCc -3'
miRNA:   3'- cCCAGCgauUUGGUCGaugCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 3808 0.67 0.862543
Target:  5'- uGGUUGCUAAu--GGCUacGCGGCGCu- -3'
miRNA:   3'- cCCAGCGAUUuggUCGA--UGCCGCGcg -5'
21268 5' -55.1 NC_004778.3 + 7501 0.66 0.914928
Target:  5'- uGGGUCaaacaGCgcgAAuacucGCCucccuuauaauuauAGCUgaACGGCGCGCg -3'
miRNA:   3'- -CCCAG-----CGa--UU-----UGG--------------UCGA--UGCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 9265 0.66 0.904556
Target:  5'- -aGUgGUUuGACCAGCgcGCGGUGCuGCa -3'
miRNA:   3'- ccCAgCGAuUUGGUCGa-UGCCGCG-CG- -5'
21268 5' -55.1 NC_004778.3 + 9693 0.68 0.838602
Target:  5'- cGGcGUCGUguu-CCAaa-ACGGCGCGCa -3'
miRNA:   3'- -CC-CAGCGauuuGGUcgaUGCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 10928 0.69 0.804036
Target:  5'- cGGuUUGCUGuuGCUcgauGGCguuuacgGCGGCGCGCa -3'
miRNA:   3'- cCC-AGCGAUu-UGG----UCGa------UGCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 11648 0.66 0.927844
Target:  5'- uGGUCGUaucGCC-GUUACaGCGCGUg -3'
miRNA:   3'- cCCAGCGauuUGGuCGAUGcCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 15598 0.68 0.846784
Target:  5'- uGGUCGCgcggAGGCgGcGCUGCGaGCaGUGCu -3'
miRNA:   3'- cCCAGCGa---UUUGgU-CGAUGC-CG-CGCG- -5'
21268 5' -55.1 NC_004778.3 + 18818 0.75 0.474964
Target:  5'- uGGGUUGCUucgcggcAACUuucuugggGGCgguagGCGGCGCGCg -3'
miRNA:   3'- -CCCAGCGAu------UUGG--------UCGa----UGCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 26812 0.71 0.674122
Target:  5'- aGGUUGCUGGGCCgcgcgGGUuuugacauggcuccUACGcGCGCGCu -3'
miRNA:   3'- cCCAGCGAUUUGG-----UCG--------------AUGC-CGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 29243 0.66 0.916686
Target:  5'- uGGGUcCGCUccGCCGag-GCGGCGCcCg -3'
miRNA:   3'- -CCCA-GCGAuuUGGUcgaUGCCGCGcG- -5'
21268 5' -55.1 NC_004778.3 + 29330 0.67 0.884575
Target:  5'- aGGUgGCgcGGCgCGcGCUGgGGUGCGCc -3'
miRNA:   3'- cCCAgCGauUUG-GU-CGAUgCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 30555 0.67 0.877453
Target:  5'- cGGGuUCGCcauAGCCgAGUUugGcaGCGUGCa -3'
miRNA:   3'- -CCC-AGCGau-UUGG-UCGAugC--CGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 30929 0.66 0.905185
Target:  5'- cGGGUUGUUGucgCGGCgcacccacaaaaauUGGCGCGCu -3'
miRNA:   3'- -CCCAGCGAUuugGUCGau------------GCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 31702 0.67 0.876728
Target:  5'- -uGUCGCacucgacGAugCGGUUuugcugcGCGGCGCGCu -3'
miRNA:   3'- ccCAGCGa------UUugGUCGA-------UGCCGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 32441 0.66 0.922387
Target:  5'- ----gGCUGcAUCAGCaUGCGGCGCaGCc -3'
miRNA:   3'- cccagCGAUuUGGUCG-AUGCCGCG-CG- -5'
21268 5' -55.1 NC_004778.3 + 32489 0.69 0.785765
Target:  5'- cGGUCGUggcacgcgagcuUGAACaUGGCUGCGucauGCGCGCu -3'
miRNA:   3'- cCCAGCG------------AUUUG-GUCGAUGC----CGCGCG- -5'
21268 5' -55.1 NC_004778.3 + 32802 0.7 0.76118
Target:  5'- uGGaGUCGCUGgccauugcggacgaaAACCAGUUuCGGaCGCGg -3'
miRNA:   3'- -CC-CAGCGAU---------------UUGGUCGAuGCC-GCGCg -5'
21268 5' -55.1 NC_004778.3 + 32842 0.68 0.812937
Target:  5'- ---aCGCUAGcggcguagacGCgCAGCUgccGCGGCGCGUg -3'
miRNA:   3'- cccaGCGAUU----------UG-GUCGA---UGCCGCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.