Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21269 | 3' | -47.5 | NC_004778.3 | + | 19812 | 0.75 | 0.862574 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGAGa -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 66424 | 0.74 | 0.900192 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGAGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 20033 | 0.73 | 0.925511 |
Target: 5'- uGCGUC---GGCGCcgaccUCGCUUUUCGGGa -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 66555 | 0.72 | 0.959293 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGc -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 19747 | 0.72 | 0.959293 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGc -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 68245 | 0.72 | 0.95527 |
Target: 5'- uGCGUCgcUGGCGCUCggGCUgUUCGAa -3' miRNA: 3'- gUGCAGauAUCGUGAG--CGAaAAGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24226 | 0.72 | 0.95527 |
Target: 5'- uGCGUC---AGCGCcgaccgCGCUUUUCGAGu -3' miRNA: 3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 24028 | 0.72 | 0.95527 |
Target: 5'- uGCGUC---AGCGCcgaccgCGCUUUUCGAGu -3' miRNA: 3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99516 | 0.72 | 0.959293 |
Target: 5'- uGCGUC---GGCGCcgaccUCGCUUUUCGGGc -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122665 | 0.72 | 0.950986 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122555 | 0.72 | 0.950986 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 19681 | 0.72 | 0.950986 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122406 | 0.72 | 0.950986 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122308 | 0.72 | 0.950986 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 19967 | 0.72 | 0.959293 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGc -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 5738 | 0.7 | 0.986651 |
Target: 5'- gACGg--GUGGCGCUCGUcUUUCGGa -3' miRNA: 3'- gUGCagaUAUCGUGAGCGaAAAGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122856 | 0.7 | 0.988289 |
Target: 5'- gCAUGUCUAaGGgAUUUGUUUUUUGAGa -3' miRNA: 3'- -GUGCAGAUaUCgUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99321 | 0.7 | 0.980672 |
Target: 5'- aGCGgggUUAaauGUACUCGUUUUUCGAGa -3' miRNA: 3'- gUGCa--GAUau-CGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99550 | 0.69 | 0.993342 |
Target: 5'- gCAUGUUUAaaaaaCACUCGUUUUUCGGGu -3' miRNA: 3'- -GUGCAGAUauc--GUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 34462 | 0.69 | 0.992283 |
Target: 5'- gCGCGUCgaggAGCGCacCGCgg-UCGAGa -3' miRNA: 3'- -GUGCAGaua-UCGUGa-GCGaaaAGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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