Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21269 | 3' | -47.5 | NC_004778.3 | + | 68245 | 0.72 | 0.95527 |
Target: 5'- uGCGUCgcUGGCGCUCggGCUgUUCGAa -3' miRNA: 3'- gUGCAGauAUCGUGAG--CGAaAAGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 80822 | 0.67 | 0.998582 |
Target: 5'- aCGCGUgcCUuaaagaGUGGCACaCGCUgUUCGAGu -3' miRNA: 3'- -GUGCA--GA------UAUCGUGaGCGAaAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 91345 | 0.68 | 0.99511 |
Target: 5'- aCGCGUCUGUGG-AgaCGCUgUUCGAc -3' miRNA: 3'- -GUGCAGAUAUCgUgaGCGAaAAGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99274 | 0.92 | 0.161709 |
Target: 5'- gCACGUauaagAUAGCGCUCGCUUUUCGAGa -3' miRNA: 3'- -GUGCAga---UAUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99321 | 0.7 | 0.980672 |
Target: 5'- aGCGgggUUAaauGUACUCGUUUUUCGAGa -3' miRNA: 3'- gUGCa--GAUau-CGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99443 | 0.81 | 0.587573 |
Target: 5'- gCACGUCUAaaaaUAGCACaUGCUUUUCGAc -3' miRNA: 3'- -GUGCAGAU----AUCGUGaGCGAAAAGCUc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99516 | 0.72 | 0.959293 |
Target: 5'- uGCGUC---GGCGCcgaccUCGCUUUUCGGGc -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99550 | 0.69 | 0.993342 |
Target: 5'- gCAUGUUUAaaaaaCACUCGUUUUUCGGGu -3' miRNA: 3'- -GUGCAGAUauc--GUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99614 | 0.84 | 0.461408 |
Target: 5'- gCACGUCUAaaaaUAaCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUcGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99640 | 0.66 | 0.999233 |
Target: 5'- uGCGUC---AGCGCcgacccUGCUUUUCGAGu -3' miRNA: 3'- gUGCAGauaUCGUGa-----GCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99680 | 0.88 | 0.274324 |
Target: 5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99746 | 0.88 | 0.274324 |
Target: 5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99811 | 0.88 | 0.274324 |
Target: 5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99877 | 0.88 | 0.274324 |
Target: 5'- gCAUGUUUAaaaaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 99943 | 0.94 | 0.137084 |
Target: 5'- gCAUGUCUAaaaaUAGCACUCGCUUUUCGGGu -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122308 | 0.72 | 0.950986 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122406 | 0.72 | 0.950986 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122439 | 0.78 | 0.729143 |
Target: 5'- gCACGUCUAaagaUAGCACUUGUUUUUCa-- -3' miRNA: 3'- -GUGCAGAU----AUCGUGAGCGAAAAGcuc -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122555 | 0.72 | 0.950986 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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21269 | 3' | -47.5 | NC_004778.3 | + | 122665 | 0.72 | 0.950986 |
Target: 5'- uGCGUC---AGCGCcgaccUCGCUUUUCGGGu -3' miRNA: 3'- gUGCAGauaUCGUG-----AGCGAAAAGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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